Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120104.Seq
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.42 
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.2  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   3.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.2  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    26   6.9  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   6.9  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   6.9  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   6.9  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   9.1  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   9.1  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   9.1  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 297  AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 476
            AF H  F  ++ +  N +E      N   +   P+L T+    L   +D P ++++  + 
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437

Query: 477  FDTEALVNF 503
             +T  ++NF
Sbjct: 1438 ENTPLILNF 1446


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 108 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 7
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = -3

Query: 505 SKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLVKL 332
           S  +++SV +    I +  GLS ++ +  +  +  +G+P   +S VSVT N  ++    +
Sbjct: 179 SSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNYTV 238

Query: 331 VTSGW---NLLCIKANVLN 284
            T+GW   N  C+   V N
Sbjct: 239 NTNGWTSSNFKCVDDVVAN 257


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -2

Query: 221 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 42
           + R+LSIA +LLS + + R+    +    +  N+  S V   +    T SV V+  L + 
Sbjct: 14  LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69

Query: 41  RFIFIHLSTTF 9
           R+ +     T+
Sbjct: 70  RYYYEQEDVTY 80


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 389 GNACVISFSDHKLHFVSKISNK 324
           G+AC +S  + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 688  YLHYYIFKNYGVFEYCKSLTDHSLFTN 768
            +L  Y+ K YG+  YC  L ++SL  N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 297 AFIHNRFHPLV---TNFTNKMEFVVTETNDTS 383
           AFI N++ PLV   T++TN     V +TN  S
Sbjct: 112 AFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 392 SGNACVISFSDHKLHFVSKISNKW 321
           SGN   +S  D+K++   +  NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 604 YDMDLSDFSITAVEATQYLTLLLIVEHAYLHYYI 705
           YD D+S FS+  + A + + L L  E  Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 180 GAQQIHGYAQHPGNDPAAVGNI*KQADTRQIAAVVFSTLAFIHNR 314
           GA++I   +Q P  + ++ GN   + +  QI+ +V+  + F  +R
Sbjct: 326 GAKKIAKCSQRPPKESSSTGNHYPKLEQYQISDMVYDIICFASDR 370


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 571 QHDYESNKQPDYDMDLSDFSITAVEATQY 657
           +HD++ +   D   DLSD ++  VE +++
Sbjct: 42  KHDFQGSDDHDSSTDLSDSTLEDVEGSEW 70


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 559 FALRGAKRLGYPHVAVIFSKFTKASV 482
           + +R A+ +GYP V V+ S+F +  +
Sbjct: 372 YKMRDAELIGYPFVIVVGSRFQEEGI 397


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 352 SILLVKLVTSGWNLLCIKANV 290
           S +L  L+  GW ++C  ANV
Sbjct: 19  SCILAWLIEEGWEVICYMANV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,931
Number of Sequences: 5004
Number of extensions: 63555
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)