Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120104.Seq
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 32 0.58
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 32 0.58
01_06_0203 - 27487469-27489787 30 1.8
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 29 4.1
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 29 4.1
06_03_0757 + 24267599-24268882 29 4.1
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 29 4.1
10_07_0161 - 13674631-13675433,13675793-13675862 28 9.5
09_02_0336 - 7397745-7398308,7398813-7400723 28 9.5
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 25 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 204
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 205 LSTLEMTQ 228
TL++ Q
Sbjct: 290 AETLDVKQ 297
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 25 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 204
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 205 LSTLEMTQ 228
TL++ Q
Sbjct: 290 AETLDVKQ 297
>01_06_0203 - 27487469-27489787
Length = 772
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 601 DYDMDLSDFSITAVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 744
DYD +L +S+ A + + +T IVE Y+H KN G+ EY L
Sbjct: 249 DYDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 24/32 (75%)
Frame = -1
Query: 687 GMFDDQQQS*ILSGFNRSYAKIAQIHIVIWLF 592
GM DD++ LSG+++S++ + +H++++LF
Sbjct: 139 GMIDDKELQSALSGYSQSFS-LRTVHLLMYLF 169
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 24/32 (75%)
Frame = -1
Query: 687 GMFDDQQQS*ILSGFNRSYAKIAQIHIVIWLF 592
GM DD++ LSG+++S++ + +H++++LF
Sbjct: 155 GMIDDKELQSALSGYSQSFS-LRTVHLLMYLF 185
>06_03_0757 + 24267599-24268882
Length = 427
Score = 29.1 bits (62), Expect = 4.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 176 NWRSANTWLCSAPWK*PSRCWK 241
+WR A W+C PW + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +1
Query: 70 TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFR 249
TE+ S+++ K E+ E D+ + S + YET ++ + SK LS L +P + +
Sbjct: 84 TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD-WE 141
Query: 250 NKQTL 264
N+++L
Sbjct: 142 NERSL 146
>10_07_0161 - 13674631-13675433,13675793-13675862
Length = 290
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +2
Query: 176 NWRSANTWLCSAPWK*PSRCWK 241
+WR A W+C PW W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +1
Query: 31 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 210
+MK +K N V + EI + K + + FD+K+L ++I +KY LS
Sbjct: 616 EMKSMKLNDVWDLEEIPKGAKTETKKFLSSNFDMKDLGEASYVLGIEIHRDRTKYALGLS 675
Query: 211 TLEMTQPLLEIF 246
+ +L+ F
Sbjct: 676 QKTYIEKVLKKF 687
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,528,167
Number of Sequences: 37544
Number of extensions: 378276
Number of successful extensions: 954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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