Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120104.Seq
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U58737-3|AAM69082.2|  189|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    29   2.8  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan pr...    29   3.7  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   3.7  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    29   4.8  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   8.5  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 514 VIFSKFTKASVSN-SRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLV 338
           V+    T  +V N  RL+I  I GLS+  +STPS  V++   P  L S+V++     L  
Sbjct: 245 VLLPHGTVDTVPNVDRLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFF 304

Query: 337 K 335
           +
Sbjct: 305 R 305


>U58737-3|AAM69082.2|  189|Caenorhabditis elegans Hypothetical
           protein ZK54.3 protein.
          Length = 189

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
 Frame = -3

Query: 556 ALRGAKRLGYPHVAVIFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV 377
           A+  +KR    H+  + + F  A +  +++++        +  +     V  +G   + +
Sbjct: 18  AIDDSKRWKRRHLVAVLAMFGFAFIYGTQITLSNTFMEDEQKVNKTKIPVKFIGQ-AVFL 76

Query: 376 SLVSVTTNSILLVKL--VTSGWNLLCIKANVLN 284
            LV+ T+NSILLV L  ++SG+  +C    ++N
Sbjct: 77  FLVTTTSNSILLVTLFSISSGFGGICWSGFLVN 109


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 664 LLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSL 759
           LL+I+      YYIF+   + E C S T HS+
Sbjct: 85  LLIIISFIIYFYYIFQASFIHEKCTSPTSHSM 116


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 360  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 461
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan
           protein 3 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 535 LGYPHVAVIFSKFTKASVSNSRLSILTID--GLSTEHNSTPSFSVNKMGS 392
           LG+P   VIF +F   +++ S +SIL I+   LS ++ +  SF  N   S
Sbjct: 74  LGFPRTRVIFLEFLANAMNISSISILNIEYIRLSPDNMTIVSFHNNSKDS 123


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 360  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 461
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 454 IDGLSTEHNSTPSFSVNKMGSPGML 380
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 275 GNLPSVCLFLNISNSGWVISRVLSIAMYLLSANLI 171
           G++ +VCLFLN++N    I R+++  + L SA  +
Sbjct: 232 GSMENVCLFLNLANDP-TIERIITPRIALTSAEFL 265


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 388 PENPFCLQKTRGCCCAPSTD 447
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 43  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 162
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 43  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 162
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 43  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 162
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 454 IDGLSTEHNSTPSFSVNKMGSPGML 380
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 148 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 47
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 148 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 47
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,416,259
Number of Sequences: 27780
Number of extensions: 352567
Number of successful extensions: 1052
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)