Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120104.Seq
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29560.1 68417.m04215 expressed protein                             30   1.9  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    29   2.6  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   3.4  
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    29   4.5  
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar...    29   4.5  
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar...    29   4.5  

>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 484 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWN 314
           +SN  L     D +    +S P +   K+GS G ++  + V+ + +    LV   WN
Sbjct: 135 ISNLDLDSADEDSMKQVFDSVPDWLSEKLGSAGTILPWLPVSCDDVDSEMLVVDSWN 191


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 440 DGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 321
           DG+   PL+        G  C++ F D  +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 484 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 353
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T N
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97


>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +1

Query: 19  DKCIKMKRVKC-NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSS----LESYETLKIKLA 183
           D  IK K +   +K +T+T +  S++ I      +E +L+N+      L+ Y+ LK++  
Sbjct: 42  DLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVELRNILMTHVILDYYDELKLQ-G 100

Query: 184 LSKYMAMLSTLEMTQPLLE 240
           + +   ML+TL  T  L E
Sbjct: 101 MREKSIMLTTLYQTTGLGE 119


>At4g28760.2 68417.m04113 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 145 SLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKQTLGKL 273
           S ES    + K  LS+  A++S    TQPL  + R   TLG++
Sbjct: 458 SPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLGEM 500


>At4g28760.1 68417.m04112 expressed protein predicted protein.
           Arabidopsis thaliana
          Length = 924

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 145 SLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKQTLGKL 273
           S ES    + K  LS+  A++S    TQPL  + R   TLG++
Sbjct: 458 SPESSVCREAKKRLSERWALMSVSGRTQPLKHVSRTSSTLGEM 500


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,165,039
Number of Sequences: 28952
Number of extensions: 317826
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)