Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120103.Seq
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    33   0.063
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    30   0.45 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    30   0.45 
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    29   0.59 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.4  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.2  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   5.5  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    26   5.5  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   5.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   5.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   7.3  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.6  

>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 686 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNM 510
           EGE DD+   +ES  + +++   +S+K +   E  +ND   R    E + + L A L +
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRL 431


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -2

Query: 725 LTTKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE--- 555
           L+   N++  +QT+    DL+ + E +   +K L   ++      ET KND  N  E   
Sbjct: 310 LSIAQNSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNA 367

Query: 554 QFELRLNELDAKLN 513
            +E  + E   KLN
Sbjct: 368 NYETEMKEARQKLN 381


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 14/56 (25%), Positives = 31/56 (55%)
 Frame = -2

Query: 686 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAK 519
           E    +L    E+ +K ++   TNS+   V+ +   N++ ++ ++ +L+LNE + K
Sbjct: 554 ENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKK 609


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 346 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 450
           K +LL + KS+ FD  V+AF KYG+   F  V R +
Sbjct: 2   KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -2

Query: 692 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 513
           + EG++ DL  KI  + K   KLNT     ++T +     +    ++ E R+  L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567

Query: 512 M 510
           M
Sbjct: 568 M 568


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = -2

Query: 674 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 510
           D+  + ++ ++K  KKL  ++E+    H T K     N +G  F + ++ L  +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 113 KYILITIIHVFILQYFLYNLF 175
           +Y+L+ II +  L YF+YN F
Sbjct: 5   EYVLLVIILILSLCYFIYNNF 25


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 445 KRHRAIFAFRYDGGFQFFGRLRMLSLASSSFKRNSNCSNLLPTSF 579
           KR +A    R+   +Q F   R L  A  SF  N+N  N L T+F
Sbjct: 177 KRMKAKPFLRFQQKYQQFTH-RWLEFAPQSFSSNTNSVNPLQTTF 220


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -1

Query: 441 RDITKHQHLAIFSERI-DDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHPNPLLAIQ 265
           R+I  + +  +F E +  D I L     QE +     +++E+     ++G H + ++ ++
Sbjct: 390 REIGGYTYKVVFYENVFQDSILLGNFASQEGNV----LKYENGQSC-WNGPHRSAIVTVE 444

Query: 264 CINENSTINITKLEK 220
           C  EN  +++ + +K
Sbjct: 445 CGVENEIVSVLEAQK 459


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 719 TKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEK 606
           T++ ++  + T+GE  DL D+I+  L   ++ + ++ K
Sbjct: 630 TEAGSIELIDTQGEESDLEDRIDRTLPGARRGDLSARK 667


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 89   FYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVD 205
            F ++FI  +YI I  I V +L    + LFN  +S  + D
Sbjct: 1432 FKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHYPD 1470


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 650 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDA 522
           + L H+  L   +      H TFK++V N    +EL  +EL A
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAA 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,372
Number of Sequences: 5004
Number of extensions: 64823
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)