Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120103.Seq
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_33332| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 29   5.9  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  29   5.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   5.9  
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   5.9  

>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 107 RNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVM 238
           +  Y+L+++I  FI  YF Y +FN +M  +      SY +NF +
Sbjct: 755 KGSYMLVSLIFAFITPYFFYMVFNTLMMILKP--KMSYITNFTI 796


>SB_33332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 107 RNKYILITIIHVFILQYFLYNLFNYIMSTI--HVDYTFSYFSNFVMFIVEFS 256
           +  Y+L+++I  FIL Y LY ++   M+ +   V Y   +   +   I+ ++
Sbjct: 275 KGSYMLVSLIFAFILPYLLYFIYFTAMTILKPKVSYVIDFTVRYAAAIIGYA 326


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 501 AEKLKTAIVTESKNGTVTFPRDITKHQHL 415
           AE +K AIV ++K   + FPR +T  Q+L
Sbjct: 33  AEHIKHAIVEQAKRAKLGFPRSLTLAQNL 61


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 83  KLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIH--VDYTFSYFSNFVMFIV 247
           +LF I    + ++LITI+H  +   + Y     +++ +H  +   ++Y S FV+  +
Sbjct: 97  RLFMIYAYCSLFVLITIVHACLFMIYAYCSLFLLITIVHACLFMIYAYCSLFVLITI 153


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 692  QTEGERDDLRDKIESVLKHVKKLNTNSEKFMV--THETFKNDVGNRFEQFELRLNE 531
            Q + E+DDL+ K++ + K ++K   N+E+ +   T E  K     R  Q +L L E
Sbjct: 4280 QLQQEKDDLKSKLDQLKKTLQKSEANAEEALQRRTDELEKLQSQTRSLQSQLELIE 4335


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 83  KLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIH--VDYTFSYFSNFVMFIV 247
           +LF I    + ++LITI+H  +   + Y     +++ +H  +   ++Y S FV+  +
Sbjct: 97  RLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITI 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,819,124
Number of Sequences: 59808
Number of extensions: 480706
Number of successful extensions: 1366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)