Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120103.Seq
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82284-2|CAB05290.1| 402|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 3.0
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 29 3.0
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 3.0
AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine re... 29 3.0
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 3.9
Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 29 5.2
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 29 5.2
U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine rece... 29 5.2
AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b p... 29 5.2
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 29 5.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 9.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 9.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 9.1
AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z82284-2|CAB05290.1| 402|Caenorhabditis elegans Hypothetical
protein T27E7.3 protein.
Length = 402
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 68 TKCTIKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIV 247
TK TIK YI I Y+L ++ + YF+ ++ + T ++ FS S F +F +
Sbjct: 220 TKSTIKTLYICCIIRDYVLSPVVACVSVIYFIGSI---SIETFSLETLFSLKSQFTIFRI 276
Query: 248 EFSLI 262
F LI
Sbjct: 277 -FQLI 280
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 659 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 558
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 659 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 558
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 686 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRL-NELDAK 519
EGE +L D+IE + VKKL +E V +T V ++ +L NEL+ K
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDK 966
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 686 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRL-NELDAK 519
EGE +L D+IE + VKKL +E V +T V ++ +L NEL+ K
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDK 966
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = +2
Query: 116 YILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFS 256
YI+ ++ FI+ + F +I ++++DY+ ++FS + F++ +
Sbjct: 98 YIISSLASAFIIDSRTLSGFYFIQPSLYLDYSSNFFSVAITFLMSLN 144
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 659 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 558
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine
receptor, class sx protein8 protein.
Length = 296
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 65 KTKCTIKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFI 244
KT +K I+FI + Y+ + +I+ FIL + + N ++ I + S+ F I
Sbjct: 199 KTMRHLKFSAIIFIISNYLSVFVINAFILYGYAGDELNGVIGNISIFSMISFTHTFYTII 258
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 405 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVL 304
S++ D +K+A+ +G+E ++R+ EDD E L
Sbjct: 182 SQKAKDEMKMAYQVGREEALQQRRNDLEDDEENL 215
>Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical
protein F56G4.6 protein.
Length = 765
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 511 MLSLASSSFKRNSNCSNLLPTSFLNVSWVT 600
+L L S K NCS +LP SF + +T
Sbjct: 110 LLKLCKKSIKTTGNCSKILPISFRELPGLT 139
>Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical
protein F38E11.6a protein.
Length = 416
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -2
Query: 674 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 552
D+L +I +V +++ N + + F+V +FKN +F++
Sbjct: 303 DNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQDAEKFKR 343
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -1
Query: 426 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEN 250
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 249 STINITKLEK 220
T T +EK
Sbjct: 686 LTYE-TFMEK 694
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -1
Query: 426 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEN 250
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 249 STINITKLEK 220
T T +EK
Sbjct: 686 LTYE-TFMEK 694
>U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein117 protein.
Length = 372
Score = 28.7 bits (61), Expect = 5.2
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Frame = +2
Query: 119 ILITIIHVFIL--QYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFSLIH*IANKGFGC 292
ILI I+HVFIL + + N +M+ + + F F+NF + F I F C
Sbjct: 50 ILINIVHVFILTRKPMRTSSINILMAAVAL---FDIFTNFQQIEIIFERNTSIF---FEC 103
Query: 293 TPXXXXXXXXXKRIFRL-----RKCRSWPKTKASLMRSSM 397
P + IF + R+C +W + MR+ M
Sbjct: 104 FPTDTYGVILTRAIFDIVNDYSRRCSTWFIVSIAFMRTLM 143
>AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b
protein protein.
Length = 157
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 359 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 502
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 359 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 502
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 92 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 214
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 92 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 214
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 92 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 214
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 92 YILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVDYTF 214
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical
protein Y37A1B.6 protein.
Length = 144
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 137 HVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVE 250
+ F+L YF N+FN + IH TF ++F F++E
Sbjct: 23 YCFMLHYFGKNMFNSNFADIH--NTFLMVASFEQFVLE 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,997
Number of Sequences: 27780
Number of extensions: 380804
Number of successful extensions: 1311
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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