Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120103.Seq
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.47 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.47 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.47 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 IMSTIHVDYTFSYFSNFVMFIVEFSLIH 265
           ++S+I +DY F  F+ F  F   F ++H
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 IMSTIHVDYTFSYFSNFVMFIVEFSLIH 265
           ++S+I +DY F  F+ F  F   F ++H
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 IMSTIHVDYTFSYFSNFVMFIVEFSLIH 265
           ++S+I +DY F  F+ F  F   F ++H
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 58  LEKNKMYNQTILYIIYTK*IHTNNYYTCFYFTIL 159
           +E+ +     I+  +    IH NNY    Y+ I+
Sbjct: 304 IERERSREPKIISSLSNNTIHNNNYNKKLYYNII 337


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 665 RDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 531
           RD+I   +     +NT  E+  +T +   + +GN  E   L  N+
Sbjct: 314 RDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQ 358


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 462 FCFPLRWRFSIFRPTAHVKFGVEFVQ 539
           FC    W F + R    V+ GV F++
Sbjct: 291 FCKAFPWHFVVDRQLELVQLGVGFMR 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,727
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)