Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120103.Seq
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04670.1 68416.m00500 WRKY family transcription factor simila...    30   2.1  
At2g31500.1 68415.m03848 calcium-dependent protein kinase, putat...    29   3.7  
At1g49560.1 68414.m05557 myb family transcription factor contain...    29   4.8  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   6.4  
At2g33050.1 68415.m04053 leucine-rich repeat family protein cont...    28   6.4  
At2g30250.1 68415.m03682 WRKY family transcription factor              28   6.4  
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain...    28   8.4  
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain...    28   8.4  
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain...    28   8.4  
At2g45140.1 68415.m05618 vesicle-associated membrane protein, pu...    28   8.4  

>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 608 FRCLYSVFLHVLKQIQFCRANHHARLQFEGAATRCFWLSKFNRIKIF 748
           FR  Y + +H  +QI + R+N    L+F+G+ + C+  S  N  + F
Sbjct: 141 FRAPYQL-IHNHQQIAYSRSNSGVNLKFDGSGSSCYTPSVSNGSRSF 186


>At2g31500.1 68415.m03848 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Arabidopsis thaliana] gi|836942|gb|AAA67655;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 582

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 504 SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVL 364
           S EKL+T I  E     V   R + KH ++  F E  +D+  +  V+
Sbjct: 98  SKEKLRTEIDVEDVRREVEIMRCLPKHPNIVSFKEAFEDKDAVYLVM 144


>At1g49560.1 68414.m05557 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 333

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 698 HLQTEG-ERDDLRDKIESVLKHVKKLNTNSEK 606
           H+Q EG   D+++  ++    H++K N+N+EK
Sbjct: 226 HMQEEGLTNDEVKSHLQKYRLHIRKPNSNAEK 257


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = -2

Query: 737 CG*ILTTKSN--ALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETF---KND 573
           CG +  TK    ALL+ + +  + D + KIE +   +KKL      +    ET    K +
Sbjct: 60  CGKVEFTKDEVLALLNERAKAGKFDTKGKIEQMTDIIKKLKVCVRWYQQVDETHVQDKEN 119

Query: 572 VGNRFEQFELRLN--ELDAK 519
           + +  +  E R +  ELDAK
Sbjct: 120 LSSSLQSAEKRYSDKELDAK 139


>At2g33050.1 68415.m04053 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 800

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 487 FQFFGRLRMLSLASSSFKRN--SNCSNLLPTSFLNVS 591
           F    RL +LSLASSSF     S+ SNL+  + LN+S
Sbjct: 111 FSNLTRLEVLSLASSSFTGQVPSSISNLILLTHLNLS 147


>At2g30250.1 68415.m03682 WRKY family transcription factor
          Length = 393

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 355 LLAQNKSEFDAVVDAFR--KYGQMLVFGN 435
           ++ Q  S+ D ++D FR  KYGQ +V GN
Sbjct: 316 VVVQTISDIDVLIDGFRWRKYGQKVVKGN 344


>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 196

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 535 TNSTPNLTCAVGRKIENRHRNGKQKWHG 452
           TNST    C+ G KI  R+ +GK +++G
Sbjct: 6   TNSTIKFLCSYGGKILPRYPDGKLRYNG 33


>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 196

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 535 TNSTPNLTCAVGRKIENRHRNGKQKWHG 452
           TNST    C+ G KI  R+ +GK +++G
Sbjct: 6   TNSTIKFLCSYGGKILPRYPDGKLRYNG 33


>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 196

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 535 TNSTPNLTCAVGRKIENRHRNGKQKWHG 452
           TNST    C+ G KI  R+ +GK +++G
Sbjct: 6   TNSTIKFLCSYGGKILPRYPDGKLRYNG 33


>At2g45140.1 68415.m05618 vesicle-associated membrane protein,
           putative / VAMP, putative similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 239

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -2

Query: 719 TKSNALLHLQTEGERD-DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 543
           + S  L+ +Q + E   DL+ K + +L+ V      + K  VTHE F  + G+R E+ +L
Sbjct: 62  SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKD-VTHEMFSKEAGHRVEETKL 120

Query: 542 RL 537
           R+
Sbjct: 121 RV 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,756
Number of Sequences: 28952
Number of extensions: 322511
Number of successful extensions: 993
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)