Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120102.Seq
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    28   1.5  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    28   1.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    28   1.5  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   4.5  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   4.5  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    27   4.5  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.9  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   7.8  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   7.8  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.8  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   7.8  

>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 118 KLKYT-VVNSTKIVTRKPNDIFNEIDKELNGNCPFIKFIQRDYIFDASFRQICLI 279
           K+ +T   N  KI+  +      ++  EL GN PFI F   D+  D +    C I
Sbjct: 237 KVSFTGSTNVGKILMGQSASTIKKVSMELGGNAPFIVF--PDFPIDQAVESFCTI 289


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 118 KLKYT-VVNSTKIVTRKPNDIFNEIDKELNGNCPFIKFIQRD 240
           K+ +T   N  KI+ ++ +    ++  EL GN PFI F   D
Sbjct: 242 KVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDAD 283


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 219 YQVYSARLHIRRQFPPDLLDLLNEYMTKSSIMKIITKFVIEE---NPAMNG 362
           Y  + + LH+  + PPD+ D+ ++ + K  ++    +  ++E   +P  NG
Sbjct: 318 YLTFQSILHLSYEIPPDISDVASDLIKKLLVLDPKDRLTVDEIHQHPFFNG 368


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 623 YRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVPAYLLIRG 748
           Y     P R TG+V  +D+N K  +V  +++    A + + G
Sbjct: 401 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHG 442


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 749 HLLLKDMQAPCLRTRV*LKKLFRSYQQHTRRPS 651
           H+L K     C+ TR  LK+ +  + +HT + S
Sbjct: 3   HILNKGSSKSCIYTRPCLKRFYHQHYEHTGKLS 35


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 668 VVDKNEKVFLVKHVFSNTVPAYLLI 742
           V D +++VF+V H+F +++PA  L+
Sbjct: 101 VTDASKEVFVVVHMFQDSLPACKLL 125


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 13  VDNNILPPHPSNAKTRKINNSMFMLKNFYKGL 108
           V N+  PP P+N  T   N+     K FYK L
Sbjct: 138 VFNSCSPPKPTNPITIIDNDKTHSFKKFYKSL 169


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 361 PFIAGFSSITNLVIIFMIELLVMYSFSRSSKSGGN-WRRICSR 236
           P +  F+S+   V     + ++MY  + S++SGG  WR + +R
Sbjct: 598 PLVLLFASVLFCVNYLTQKYILMYVSNSSTESGGGYWRPVVNR 640


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 276 DLLNEYMTKSSIMKIITKFVIEENP--AMNGEMSREIILDRY--SVDNYRKLYIKMEITN 443
           D  N Y T    M    KFVI ++P    +   S E  +D Y    ++   ++  M +TN
Sbjct: 378 DQSNPYYTVIKTMVAFRKFVITQDPDWVTSTYQSIESAVDHYVGQKNDVLVMFNNMGVTN 437

Query: 444 QFPVMYDHESSY 479
              + Y+ E++Y
Sbjct: 438 NLTI-YEVETNY 448


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 279 LLNEYMTKSSIMKIITKFVIEENPAMN-----GEMSREIILDRYSVDNYRKLYIK 428
           +L+E + K    K +  F+I E+P++N      E ++E I     V + RK Y++
Sbjct: 58  VLDETLPKKGYEKALHSFIIHEDPSLNYISALKETAKERIRVTVPVYSSRKSYVQ 112


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 270 LLDLLNEYMTKSSIMKIITKFVIEE 344
           L+D   E M   SI+ IITK++IE+
Sbjct: 38  LVDRSIERMESCSIINIITKYIIEQ 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,390
Number of Sequences: 5004
Number of extensions: 73694
Number of successful extensions: 224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)