Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120102.Seq
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0113 + 14550435-14550822,14550831-14551660,14552105-145522...    30   2.0  
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774...    29   3.6  

>03_03_0113 +
           14550435-14550822,14550831-14551660,14552105-14552278,
           14552350-14552517
          Length = 519

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 494 FAHKNVRRFMIIH-DRKLVGYFHFYVQLAIIVYRV 393
           +AH    RF I+H   K VG++++  QLA  V+RV
Sbjct: 160 YAHPATGRFHILHASGKTVGHYYYRKQLAPAVFRV 194


>06_01_0996 +
           7746358-7746493,7747102-7747262,7747586-7747647,
           7748142-7748595,7748994-7749134,7749444-7749633,
           7749842-7750530,7750605-7750804,7751210-7751375,
           7751850-7752046,7752162-7752396
          Length = 876

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 419 QLAIIVYRVAIKNNLARHFTVHSGVFFN--HKLGNYFHDRAFGHVFV 285
           +LA+IV    IK+N  R F    G FF    KLGN  +D+A GH F+
Sbjct: 710 ELALIVLSADIKDNSKRIFPAIIGAFFPILQKLGN-GNDKA-GHYFM 754


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,079
Number of Sequences: 37544
Number of extensions: 423651
Number of successful extensions: 893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)