Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120102.Seq
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)                    31   0.90 
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 31   1.2  
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)         31   1.2  
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_8610| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  

>SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)
          Length = 285

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 563 AINRLFGATETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVK 703
           A++RL  A+  +  H N  + R S  P  +TG+ Y+    ++++ +K
Sbjct: 9   ALSRLHRASFHLTLHDNQFLGRASEQPCDVTGEYYINQPRDRIYPIK 55


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = +2

Query: 614 LLVYRQSSP-------PVRLTGDVYVVDKNEKVFLVKHVFSNTVPAY 733
           +LVY +SSP         RLTG  YV  +N +V L KHV     P Y
Sbjct: 13  VLVYNRSSPLSAEDEKEKRLTGVQYVTSENREVTLEKHVHLKQRPLY 59


>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
          Length = 375

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = +2

Query: 614 LLVYRQSSP-------PVRLTGDVYVVDKNEKVFLVKHVFSNTVPAY 733
           +LVY +SSP         RLTG  YV  +N +V L KHV     P Y
Sbjct: 13  VLVYNRSSPLSAEDEKEKRLTGVQYVTSENREVTLEKHVHLKQRPLY 59


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 587 TETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVP 727
           ++ +D      ++RQ+ P V+L G++  +  N+K F    +F +T+P
Sbjct: 5   SDKLDIQQLREIWRQNGPDVKLAGEISNLLLNKKCFFELEMFLSTLP 51


>SB_8610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 404 VYRVAIKN-NLARHFTVHSGVFFNHKLGNYFHDR 306
           +Y+ A KN N++  F +  GVF+ H LG+Y  DR
Sbjct: 474 LYKSAAKNGNISAQFNM--GVFYEHGLGDYDVDR 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,650,904
Number of Sequences: 59808
Number of extensions: 514586
Number of successful extensions: 1339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)