Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120102.Seq
         (853 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2293|AAF55378.1|  623|Drosophila melanogaster CG4009-PA...    31   2.7  
AY113198-1|AAM29203.1|  425|Drosophila melanogaster AT03090p pro...    29   6.1  
AE013599-3068|AAF57424.3|  425|Drosophila melanogaster CG13442-P...    29   6.1  

>AE014297-2293|AAF55378.1|  623|Drosophila melanogaster CG4009-PA
           protein.
          Length = 623

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 52  KTRKINNSMFMLKNFYKGLPLFKLK-YTVVNSTKIVTRKPNDIFNEIDKELN 204
           + RKIN + F    +Y  LPLF  + YT +N   I   +P +  N+ D+ +N
Sbjct: 335 EARKINIAQFQKITYYDWLPLFVGRTYTYLNGL-IYPVEPTEYVNDYDETVN 385


>AY113198-1|AAM29203.1|  425|Drosophila melanogaster AT03090p
           protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 510 LIAKCLCSQKCTTIHDHT*QETGWLFPFLCTACDNC 403
           L++ CLC    T +H H  +   W+    CT C+ C
Sbjct: 179 LVSPCLCKGSLTYVHVHCLE--CWISTSRCTTCELC 212


>AE013599-3068|AAF57424.3|  425|Drosophila melanogaster CG13442-PA
           protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 510 LIAKCLCSQKCTTIHDHT*QETGWLFPFLCTACDNC 403
           L++ CLC    T +H H  +   W+    CT C+ C
Sbjct: 179 LVSPCLCKGSLTYVHVHCLE--CWISTSRCTTCELC 212


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,935,806
Number of Sequences: 53049
Number of extensions: 769232
Number of successful extensions: 1783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)