Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120102.Seq
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    31   1.3  
At3g16340.1 68416.m02066 ABC transporter family protein similar ...    29   3.9  
At5g37080.1 68418.m04451 hypothetical protein includes At5g37080...    29   5.2  
At5g22180.1 68418.m02582 hypothetical protein                          28   9.1  
At5g04050.1 68418.m00386 maturase-related contains similarity to...    28   9.1  
At2g32870.1 68415.m04030 meprin and TRAF homology domain-contain...    28   9.1  

>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +1

Query: 4   KHFVD-NNILPPH-PSNAKTRKINNSMFMLKNFYKGLPLFKLKYT-VVNSTKIVTRKPND 174
           +HFV+  N+L P  P N K   + +++ +LK     +   K +YT + + ++ +T++ ND
Sbjct: 23  EHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKND 82

Query: 175 IFNE 186
           +  E
Sbjct: 83  LREE 86


>At3g16340.1 68416.m02066 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1416

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/74 (33%), Positives = 34/74 (45%)
 Frame = +3

Query: 318 IITKFVIEENPAMNGEMSREIILDRYSVDNYRKLYIKMEITNQFPVMYDHESSYIFVSKD 497
           +++K   EEN A NG  S+ I + R  V  +  L +  +  N + V    E     VSKD
Sbjct: 779 VVSKENTEENRAENGSKSKSIDVKRGMVLPFTPLTMSFDNVNYY-VDMPKEMKEQGVSKD 837

Query: 498 ILQLKAL*TRSTRP 539
            LQL    T   RP
Sbjct: 838 KLQLLKEVTGVFRP 851


>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
           At5g37170, At2g05090
          Length = 566

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 649 TDRRRTLPVHEQVGMKVDSFRGAKQTIYSQNT*YTLLGRVERV 521
           TD  +  PV + V + +  F G K   Y +N    +LG+V RV
Sbjct: 132 TDVIKCDPVSDSVFLDLADFEGVKTESYDENVLIDILGQVVRV 174


>At5g22180.1 68418.m02582 hypothetical protein
          Length = 169

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 530 YAPKQRILSILAINRLFGATETIDFHPNLLVYRQSSPPVRLTGD 661
           + P+QR+L  + ++    AT  IDF    LV   SS P++  GD
Sbjct: 58  FMPRQRLLESITVSPSSSATLHIDF----LVKPSSSCPIQYNGD 97


>At5g04050.1 68418.m00386 maturase-related contains similarity to
           maturase proteins from several species
          Length = 567

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +3

Query: 186 DR*RIEWQLSVYQVYSARLHIRRQFPPDLLDLLNEYMTK--SSIMKIITKFVIEENPAMN 359
           +R +  W L+     S R HIR + P DL+D  +E+  +    +     K V+E+     
Sbjct: 451 ERWKWHWLLTRGDFLSLR-HIREKLPQDLIDAYDEFQEQVDKHLAPTQAKKVLEDEERRV 509

Query: 360 GEMSREIILDRYSVDNYRKLYIKM 431
            E   +   +R +V++  KL +K+
Sbjct: 510 EEEEEQRYAER-TVEDLTKLCMKV 532


>At2g32870.1 68415.m04030 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 416

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 488 HKNVRRFMIIHDRKLVGYFHFYVQLAIIV--YRVAIKNNLARHFTVHSGV 345
           HK   R +I+ +RK   YF+F+ Q+  I     + I+   +R+  ++S +
Sbjct: 22  HKKSDRTLIVFNRKTPLYFYFFEQVRYITGSIYILIETPSSRNLPIYSNI 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,901
Number of Sequences: 28952
Number of extensions: 364973
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)