Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120101.Seq
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    29   0.97 
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    28   1.7  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   3.9  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    27   3.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   5.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.9  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   6.9  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.1  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.1  

>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 322 LNHARFGNEHCVWVQIQRVALLCTLSGAWCWIWSACSNVDLYLPSTW 182
           L+ + FG    +W  + R  L C   G   WI   C  V L + S W
Sbjct: 123 LSRSSFGTWGSLWPILNRSVLACVWYGVQAWIGGEC--VVLMIRSIW 167


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 570 VSASRRATIISLANKMSDRVAPPNLRWPPSIFASDRQF 457
           +  S+ +  +S  N++S       L++PPS F S RQF
Sbjct: 198 LQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQF 235


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 444 DVIAKIDDLTQKLTVANAD 500
           D  +KID LT+KL VANA+
Sbjct: 618 DSASKIDSLTEKLKVANAE 636


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 296 LITKSGVIQLIMKSKLPYAIELQEWLL 376
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 571 GSARLRKRAPRNGAVANRMADIAQDVIAKPSNPQLCHSLAVCDVGNN 711
           G +++ KRA  +  +   +AD+++ ++   S     HS A+ ++G N
Sbjct: 447 GGSQIEKRANESNNLQREIADLSEQIVELESKRNDLHS-ALLEMGGN 492


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
 Frame = -2

Query: 719 ANSLLPTSHT--ARLWHSCGLLGLAITSCAMSAMRLAT--APFRGARFRNLAEPFQRRV- 555
           ++++L +S+   AR+W   G +    T C  S+++ A+   P +     +L +     V 
Sbjct: 114 SDTILTSSYDGIARVWDKSGEIKFQSTGCG-SSLKSASWHIPNQSFLTASLDQKIFHWVI 172

Query: 554 -EPQSFRWQTK*AIGLLRQICVGHRQFLRQIVNFGNNIICI 435
            EP+S     K + G+L+ + VGH+  + ++ +  ++ + I
Sbjct: 173 EEPESMLDAEKKSSGILQTLFVGHKDIVERVRSLESSSVFI 213


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 686  RLWHSCGLLGLAITSCAMSAMRL--ATAPFRGARFRNLAEPFQRRVEPQSFRWQ 531
            R W S   L L   +C M   RL    +P R  +F N      RRVE + F WQ
Sbjct: 1140 RGWSSVATLSL--DTCKMIEKRLWPTMSPLR--QFPNCPSEVIRRVEKKEFPWQ 1189


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 574 SRFSVASSHNHFVGKQNERSGCSAKSAL 491
           S FS + SHNH    Q E+S  ++K ++
Sbjct: 537 SPFSKSKSHNHHPSSQVEKSTSNSKGSM 564


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 508 SNPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNGAVANRMAD 633
           +NP++H++   N  G  ++ +  AR+RK          R+AD
Sbjct: 241 NNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLAD 282


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 99  GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 224
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 527 LFANEMIVARRDAETARQDCE 589
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,128
Number of Sequences: 5004
Number of extensions: 66548
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)