Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120101.Seq
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    29   3.1  
10_02_0110 - 5371536-5372882                                           29   3.1  
12_02_0634 + 21416205-21416954                                         28   7.2  
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549...    28   9.5  
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885...    28   9.5  
01_06_1510 - 37859664-37861319                                         28   9.5  

>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 526 FVCQRNDCGSTRR*NGSARLRKRAP 600
           FVC R  C   RR  G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = -1

Query: 318 ITPDLVMSTVCGCKY---SGSPCFARYLEHGAGFG-RHAQTSICTCRRRGHVLPVHNLHI 151
           I+PD  +S +   +Y   S       +L  G+  G    Q S+CT R R H L VH    
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTREQVSVCTWRVRLHELRVHRSDA 379

Query: 150 LNC-WRC 133
           +N  W C
Sbjct: 380 MNLRWFC 386


>12_02_0634 + 21416205-21416954
          Length = 249

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 555 DATLKRLGKIAKTRAAKRRSGQPHGGHC 638
           DAT +R G+++    AKRR+ +  GG C
Sbjct: 131 DATGRRRGRVSGAFPAKRRADRGRGGSC 158


>12_02_0942 -
           24653834-24654046,24654346-24654482,24654626-24654959,
           24655067-24655153,24655254-24655580
          Length = 365

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 610 AVANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRP 732
           A+ ++M++++   +    N   C+S+ V D+ NN  +  RP
Sbjct: 279 ALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRP 319


>12_02_0398 -
           18586985-18587480,18587669-18587687,18588317-18588544,
           18589699-18589966
          Length = 336

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 555 DATLKRLGKIAKTRAAKRRSGQPHGGHC 638
           DAT +R G+++    AKRR+ +  GG C
Sbjct: 49  DATGRRRGRVSGDFPAKRRADRGRGGSC 76


>01_06_1510 - 37859664-37861319
          Length = 551

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 280 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 372
           AP H  H+Q++R S      +ALRHR  R A
Sbjct: 24  APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,368,224
Number of Sequences: 37544
Number of extensions: 505779
Number of successful extensions: 1609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)