Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120101.Seq
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 29 4.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 6.4
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 6.4
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 6.4
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 6.4
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 6.4
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 6.4
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 28 8.5
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 28 8.5
U64609-6|AAB04603.1| 194|Caenorhabditis elegans Hypothetical pr... 28 8.5
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 117 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAP----DSVQSRATRCICT 284
R +D +SLK V+ + + V +DG+YK ++++ P D + TR +
Sbjct: 93 RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152
Query: 285 HTQCSLPN 308
+ S PN
Sbjct: 153 KDEISPPN 160
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 417 APAVEMDTNDVIAKIDDLTQKLTVANADLAE 509
A + N +I KIDD T +L + +ADL +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKD 4846
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 417 APAVEMDTNDVIAKIDDLTQKLTVANADLAE 509
A + N +I KIDD T +L + +ADL +
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKD 4206
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 417 APAVEMDTNDVIAKIDDLTQKLTVANADLAE 509
A + N +I KIDD T +L + +ADL +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKD 4846
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 417 APAVEMDTNDVIAKIDDLTQKLTVANADLAE 509
A + N +I KIDD T +L + +ADL +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKD 4846
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 417 APAVEMDTNDVIAKIDDLTQKLTVANADLAE 509
A + N +I KIDD T +L + +ADL +
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKD 4206
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 417 APAVEMDTNDVIAKIDDLTQKLTVANADLAE 509
A + N +I KIDD T +L + +ADL +
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKD 4846
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 435 DTNDVIAKIDDLTQKLTVANADLAEQ 512
+ N +IAK+ L ++LT NA+L E+
Sbjct: 1109 ENNSIIAKLQRLIKELTARNAELEEE 1134
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 435 DTNDVIAKIDDLTQKLTVANADLAEQ 512
+ N +IAK+ L ++LT NA+L E+
Sbjct: 1109 ENNSIIAKLQRLIKELTARNAELEEE 1134
>U64609-6|AAB04603.1| 194|Caenorhabditis elegans Hypothetical
protein T28H11.7 protein.
Length = 194
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 172 QYVSTSTASTNRRLSMPTKSSTMLQIACKAGRP-AVFAPTHSAHYQIWRDSTDNEVQIAL 348
+Y + T RL S+T ++AC+ R A T +++ W+D E+++AL
Sbjct: 136 KYANNETEVNKTRLD---NSTTEFEVACERMRELANGIKTIESNHSSWQDGLMKEIKVAL 192
Query: 349 R 351
R
Sbjct: 193 R 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,162
Number of Sequences: 27780
Number of extensions: 403422
Number of successful extensions: 1036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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