Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120101.Seq
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   9.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 501 LAEQPDRSFCLPTK*LWLDATLKRLGKIAKTRAAKRRSGQPH 626
           L E   R   LPT       T+++L + A+ R  +RR+  PH
Sbjct: 146 LVESFPRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPH 187


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 IRVHVDGKYKSTFEHADQIQH 236
           + V+ DG Y + FE ++ I H
Sbjct: 34  LEVNFDGNYINNFETSNGISH 54


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 195 CRRRGHVLPVHNLHILNCWRCPWPQ 121
           CR + HV  +H+  ++  +R P  Q
Sbjct: 148 CRPKIHVFSLHDNKLITMYRFPQNQ 172


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -1

Query: 660 GFGYHVLRNVRHAVGHCAVSRRAFSQSCRAVSASRRATIISLANKMSDRVAPPNLR 493
           GF   ++ NV+        +R+  ++     S+ +R +I+  A ++S RV   + R
Sbjct: 72  GFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASAR 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,709
Number of Sequences: 438
Number of extensions: 4835
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)