Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120101.Seq
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    33   0.21 
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    29   4.5  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    29   4.5  
At4g25320.1 68417.m03643 DNA-binding protein-related contains Pf...    29   4.5  
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea...    28   5.9  
At1g79640.1 68414.m09286 protein kinase family protein contains ...    28   5.9  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    28   7.9  

>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 165 ERAIRVHVDGKYKST-FEHADQIQHHAPDSVQSRATRCICTHTQCSLP 305
           E AI   +  KYK+  F H + + HH    V+ R   C C +   SLP
Sbjct: 77  EDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNNDCYSLP 124


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 39  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 179
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 39  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 179
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At4g25320.1 68417.m03643 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 404

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 184 TSTASTNRRLSMPTKSSTMLQIACKAGRPAVFAP 285
           T  A+T   L+MPT++++  Q+  K GRP  + P
Sbjct: 64  TENAATPFSLTMPTENTSAEQLKKKRGRPRKYNP 97


>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
           family protein Similar to En/Spm-like transposon protein
           (gi:2739374)[Arabidopsis thaliana]; similar to
           GTP-binding regulatory protein and WD-repeat protein;
           contains 7 WD-40 repeats
          Length = 388

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 467 SDAKIDGGQRRFGGATRSLILFANEMIVARRD 562
           S+  +  G+R  GGA +SL++ A+++  A +D
Sbjct: 76  SNGDVITGERGGGGAVKSLVILADKLFTAHQD 107


>At1g79640.1 68414.m09286 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 694

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +3

Query: 99  GDEQPVRFVAKD--IASSLKYVNCE-RAIRVHVDGKYKSTFEHADQIQHHAPDSV--QSR 263
           GD+ P     K    ASSL   + + +   V   G++K T E+ D  +  AP  +  +S 
Sbjct: 511 GDDVPTEMAVKPPKAASSLDESDDKSKPPVVQQRGRFKVTSENLDIEKVVAPSPILQKSH 570

Query: 264 ATRCICTHTQCSLPN 308
           + + +C H+  SLP+
Sbjct: 571 SMQVLCQHSSASLPH 585


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 630 RHAVGHCAVSRRAFSQSCRAVSASRRATIISLANKMSDRV--APPNLRWPP 484
           R  +   A      SQ  RA SASR A IISL  K++      PP+L   P
Sbjct: 308 RQEMARLAREHEVMSQE-RAASASRDAAIISLIQKITGHTIQLPPSLSSQP 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,935
Number of Sequences: 28952
Number of extensions: 372354
Number of successful extensions: 980
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)