Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120100.Seq
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   4.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   4.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   4.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 626 SFNSAKFALVSTAVCLFLLAGIAALSLEDDDVDRSAI 516
           S+NS  FA++ T           + +LE DD  R+ I
Sbjct: 206 SYNSDIFAMIGTIFLWLFWPSFNSAALEGDDQQRAII 242


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 352 LLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNSN 254
           LL + H   +  D H  E +V+++F     N+N
Sbjct: 218 LLLYNHARLMSQDNHSKEYLVSIMFSHYDRNNN 250


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 99  IQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESS 224
           ++  R K L K +    PE +  +  +   K   L  KLESS
Sbjct: 65  LRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSEKLESS 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,936
Number of Sequences: 438
Number of extensions: 4907
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)