Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120098.Seq
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    30   0.36 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.9  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    27   3.3  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.8  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    26   5.8  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   7.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   7.6  

>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +2

Query: 512 KNYQIVKKEDDLFKLVKSNCYKLSNIKFNNWKYLYLTTYGVYNLFTNSFHSNCPFLLGTT 691
           +N+ ++KK DD+++ V     K   +   N+K L L    + N+   S   N   L    
Sbjct: 191 RNHTVLKK-DDIYRTVARIVGKQHMVDLKNFKLLILVQV-IKNIIGISIVQNFEELRRFN 248

Query: 692 LPQTLKKPTDEEYLPEDA 745
           L +  K+P + + +P D+
Sbjct: 249 LNEVYKQPENTKSIPNDS 266


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 674 FLLGTTLPQTLKKPTDEEYLPEDAFNYMLS 763
           +L  TT P ++     EEY P + F Y+LS
Sbjct: 433 YLTNTTYPTSIPGEQIEEYFPFEEFYYLLS 462


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 496 LTPGTTFSNFLKNPLHTMSGGKFNAITFSYVYAHNSSSSKV-SFL 365
           L  G T S  L   + TM  G   AI  +Y+Y  +SSSS   SFL
Sbjct: 349 LRNGYTKSQVLVLQMITMVTGLLGAIVATYIYTASSSSSPYGSFL 393


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 311  HAQFGIVKVKPMIAGPIKHTFSCF--L*GSHRFKASFKISLSQANNDSHKSSKNSLMSVS 138
            +  +GI +   ++AG  KH F C+  +          KI L +A ND  K S+    +V 
Sbjct: 1129 NCSWGIKEDSMLLAGINKHGFGCWQAIKNDPDLGLHDKIFLDEAKND--KESRYVPSAVH 1186

Query: 137  LYEKFSFLVSI 105
            L  +  +L+S+
Sbjct: 1187 LVRRGEYLLSV 1197


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 587 IKFNNWKYLYLTTYGVYNLFTNSFH-SNCPFLLG--TTLPQTLKKPTDEEY 730
           I+F+ W+  +L  +G +N +T S H ++   L+G  T L    +K  D  Y
Sbjct: 253 IEFDKWQQSFLQDHGYWNDYTCSLHGASFRTLVGVRTLLVSPSEKLNDASY 303


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = -2

Query: 432 SLTPLHSRTCTPTIHRHLKFRF*PTESDISCSVCHNNSPTTRTIWYRQSQT 280
           +++PL + +    I+   KF+   +E +   +   N +  ++TI Y++ +T
Sbjct: 383 NISPLDASSIATIIYNMCKFKITKSEHERELNQLRNMAEASKTIDYKEDET 433


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 532 LYNLIVFALKTKLTPGTTFSNFLKNP-LHTMSGGKFN 425
           L   + F +K+  +  T+FSN LK P  ++ S G F+
Sbjct: 158 LIQWVSFQIKSSFSIPTSFSNDLKKPSFNSFSSGSFD 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,343
Number of Sequences: 5004
Number of extensions: 76495
Number of successful extensions: 259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)