Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120098.Seq
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945...    30   2.0  
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819...    30   2.6  
04_04_0297 - 24219497-24219853,24221242-24222414                       29   4.6  
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706...    29   4.6  
08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120...    29   6.1  
12_02_0046 + 12830974-12832386                                         28   8.1  

>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
            9451345-9451945,9452206-9452239,9452514-9452577,
            9452909-9453325,9453439-9453523,9453773-9453831,
            9453931-9454043,9456407-9456509,9456597-9456654,
            9456781-9456834,9456922-9457131,9457254-9457312,
            9457436-9457495,9457709-9457802,9458366-9458506,
            9458562-9458741
          Length = 964

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +1

Query: 106  ILTKNENFSYRETDIKLFLELLCESLFACDKEILNEALKRCEPYKKQEKVCLIGP 270
            +L  N N S   TDI L +  L    F  D   L +    CEP    E  CL  P
Sbjct: 907  VLANNSNLSNNSTDIALLMLCLLTEAFYADGTSLGDV---CEPKLGAEITCLRRP 958


>07_01_1111 +
           10279778-10280065,10280265-10280340,10280734-10281944,
           10283779-10284138
          Length = 644

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 580 EQHKI*QLEILV-LDNVRCVQFVHQQLSFELSIFV 681
           E+HK+  +  L+ L   +C+   HQQLS+ ++ FV
Sbjct: 425 EEHKLFLVRTLIPLHKPKCIALYHQQLSYSITQFV 459


>04_04_0297 - 24219497-24219853,24221242-24222414
          Length = 509

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 580 EQHKI*QLEILV-LDNVRCVQFVHQQLSFELSIFV 681
           E+HK+  +  L+ L   +CV   HQQLS+ ++ FV
Sbjct: 291 EEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFV 325


>01_05_0264 +
           20168409-20168593,20168726-20169055,20170142-20170670,
           20170825-20170958,20171080-20171252,20171274-20171840,
           20172487-20172716,20172954-20172995,20173096-20173224
          Length = 772

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/75 (25%), Positives = 31/75 (41%)
 Frame = +3

Query: 270 CNHWFDFDDTKLCVSLGYYYGIHYMIYLTLSAKNETLDDDELWAYTYENVMALNLPPDIV 449
           C  +   D T L  S     G ++M  +     +   +D+ +W  T  +    +L P  +
Sbjct: 438 CRPYLSIDSTALNASATSINGHNWMYPVAFGFIDSESEDNWVWFMTQLHKAIGDLEPLAI 497

Query: 450 CKGFFRKLENVVPGV 494
           C    + LENVV  V
Sbjct: 498 CSDECKGLENVVQKV 512


>08_01_0153 -
           1200121-1200465,1201693-1202920,1204517-1204602,
           1205145-1205272,1205957-1205969
          Length = 599

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 580 EQHKI*QLEILV-LDNVRCVQFVHQQLSFELSIFV 681
           E+HK+  +  L+ L   +CV   HQQLS+ ++ FV
Sbjct: 385 EEHKLFLVRALIPLHKPKCVSMYHQQLSYCVTQFV 419


>12_02_0046 + 12830974-12832386
          Length = 470

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 354 TLSAKNETLDDDELWAYTYENVMALNLPPDIVCKGFFRKLE 476
           +L A+ E  D DE+ A T    MA N+ PD     F R LE
Sbjct: 402 SLEAQLEEADGDEIAAATVAPPMAQNVAPDDDMDEFTRSLE 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,189,006
Number of Sequences: 37544
Number of extensions: 421544
Number of successful extensions: 1015
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)