Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120097.Seq
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          30   0.027
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              26   0.43 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.00 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 KNATELPESRDGTKMVTLRNPMFHPDLPPVQIS 358
           K   E+PESRDG   V+L +P   P  P +  +
Sbjct: 118 KGLCEVPESRDGPPSVSLSSPPREPGTPRINFT 150


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 353 ISAEPQQQKSELRIPEPIPMPPAACQATINPTSNGMYTIR 472
           I+ EP+++K    I   IP+P AA +  IN       T+R
Sbjct: 39  ITIEPRRRKFHKPITLTIPVPQAANKGMINQYGGEQPTLR 78


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 87   IKSVPLWKGSQQDATPTPIARPPPLITADPSLMMF-STSQPEAPSPQAT 230
            +KS P+   ++QDA   PIA    +++++  L+ +   SQP     Q T
Sbjct: 1166 VKSAPIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNGVITQYT 1214


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 515 PAPTSCTTGCSACPPSPRATTRGTRCSGAMTR 610
           PA       C AC P PR T    + SG   R
Sbjct: 380 PAMGHWQMSCVACSPPPRQTPPSRKESGRRRR 411


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 583 YSLFRSNDEGRLRSFPRPESRLETSPNPIGTRPESNGASLF 705
           Y+LF  N E   RSF  P S +E S   +    + NG   F
Sbjct: 284 YTLFNENSEAAARSFV-PFS-IERSSQSVAEVMDRNGVLFF 322


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +2

Query: 200 PTRSTVSASDQVEEVQEEAKKNATELPESRDGTKMVTLRNPMFHPDL--PPVQISAEPQQ 373
           P +   +   ++ EV          L +S +G +       + H     P  Q  A+PQQ
Sbjct: 773 PFKGMETQDYRIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQ 832

Query: 374 QKSE 385
           Q+ +
Sbjct: 833 QQQQ 836


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 655 SPNPIGTRPESNGAS 699
           SP+P G+ P+ +G+S
Sbjct: 61  SPSPTGSSPQHSGSS 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,066
Number of Sequences: 438
Number of extensions: 3900
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)