Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120096.Seq
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    27   0.24 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.9  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 113 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRP 241
           +P C  W   +        +  PPT  PR    S+R    PRP
Sbjct: 228 VPECADWYKGRLTDEQLKELENPPTPKPRPTKVSRRKPRPPRP 270


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 208  WWRSRQLCGWLRHVVCE 158
            W + R++C W +   CE
Sbjct: 1137 WNKERKICDWPKSAKCE 1153


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 306 LKNIQAEEMVEFSSGLKGMALNLEPD 383
           +KN     +++F+ GLK + +++  D
Sbjct: 575 IKNFNIPSILQFNDGLKNLEIHVTKD 600


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,627
Number of Sequences: 336
Number of extensions: 4481
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)