Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120096.Seq
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   140   3e-34
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    46   9e-06
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    29   1.1  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    28   1.8  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    27   3.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   4.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.8  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   9.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.8  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   9.8  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  140 bits (338), Expect = 3e-34
 Identities = 65/85 (76%), Positives = 77/85 (90%)
 Frame = +3

Query: 255 ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 434
           E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+FGND+L++EG+
Sbjct: 55  ESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGE 114

Query: 435 IVKRTGAIVDVPVGEQILGRVVDAL 509
           +VKRT  IVDVPVGE +LGRVVDAL
Sbjct: 115 VVKRTRHIVDVPVGEALLGRVVDAL 139



 Score =  138 bits (335), Expect = 7e-34
 Identities = 62/86 (72%), Positives = 74/86 (86%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           GNPIDGKGPI T  R RV +KAPGI+PR SV EPMQTG+KA++S+VPIGRGQRELIIGDR
Sbjct: 140 GNPIDGKGPIKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDR 199

Query: 689 QTGKTALAIDTIINQQRFNKGEDEKR 766
           QTGKTA+A+DTI+N +R+N   DE +
Sbjct: 200 QTGKTAIALDTILNHKRWNNSSDESK 225



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = +1

Query: 763 KKLYCIYVAIGQKRSTVAQI 822
           KKLYC+YVA+GQKRSTVAQ+
Sbjct: 225 KKLYCVYVAVGQKRSTVAQL 244


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 25/81 (30%), Positives = 38/81 (46%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           G P+D +GPI       +   AP    + +  E ++TGIK V+ L P  RG +  + G  
Sbjct: 146 GEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGA 205

Query: 689 QTGKTALAIDTIINQQRFNKG 751
             GKT    + I N  + + G
Sbjct: 206 GVGKTVFIQELINNIAKAHGG 226



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 393 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 509
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVI 145


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQTGIKAVNSLVPIGRGQR 667
           G PID KGP +  +   + I    I P  R+   E +QTGI +++ L  I RGQ+
Sbjct: 113 GLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQK 165


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 619 SLHRLTHRHTRNDTWRLNADPHTGFR 542
           SLH  T  H ++D  R N+DP +  R
Sbjct: 428 SLHDSTTSHNKSDLMRTNSDPQSAMR 453


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +2

Query: 518 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDRQTG 697
           +D K PI+T  +        G I  V + E     IK   ++VPI   + E  +  R   
Sbjct: 125 VDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIE 184

Query: 698 KTALAIDT 721
           K  + +DT
Sbjct: 185 KNGI-LDT 191


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 545 KSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDRQTGKTALAIDTI 724
           KS +   +     IP V   +      + V   + +G G   +I+G R +GK+ L +D I
Sbjct: 537 KSTIAARLCGKSHIPLVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVL-VDDI 595

Query: 725 INQ 733
           +++
Sbjct: 596 LSR 598


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 479 LSDGNVYDSTSTLDNISFLDKLVIT 405
           L  GN+Y+STS  + +S LD   IT
Sbjct: 49  LEVGNIYNSTSASEILSTLDAKYIT 73


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 496 TRPRICSPTGTSTIAP 449
           TRPR+ +P+ +ST+ P
Sbjct: 55  TRPRVSAPSSSSTVVP 70


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 155 HLANYMSQPPTKLPRSPPSSKRGSLEP 235
           H  +Y+S P      SPP+SK  S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 535 WSLAVNRVTKASTTRPRICS 476
           WS AVN+V + ++TR R+ S
Sbjct: 437 WSSAVNKVHQENSTRERVVS 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,405
Number of Sequences: 5004
Number of extensions: 69995
Number of successful extensions: 271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)