Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120096.Seq
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...   156   2e-38
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...   156   2e-38
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...   144   5e-35
AL023815-2|CAD92383.1|  146|Caenorhabditis elegans Hypothetical ...   104   9e-23
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    51   1e-06
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    31   0.75 
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p...    31   1.3  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    31   1.3  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    31   1.3  
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    31   1.3  
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    30   2.3  
U64858-4|AAB18282.2|  151|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    29   5.3  

>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score =  156 bits (378), Expect = 2e-38
 Identities = 74/85 (87%), Positives = 82/85 (96%)
 Frame = +3

Query: 255 ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 434
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGD
Sbjct: 28  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGD 87

Query: 435 IVKRTGAIVDVPVGEQILGRVVDAL 509
           IVKRTGAIVDVPVG+ +LGRVVDAL
Sbjct: 88  IVKRTGAIVDVPVGDGLLGRVVDAL 112



 Score =  144 bits (350), Expect = 5e-35
 Identities = 68/86 (79%), Positives = 76/86 (88%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           GNPIDGKGPI    R RV +KAPGIIPR+SVREPM TG+KAV+SLVPIGRGQRELIIGDR
Sbjct: 113 GNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDR 172

Query: 689 QTGKTALAIDTIINQQRFNKGEDEKR 766
           QTGKTA+AIDTIINQ+RFN   D+K+
Sbjct: 173 QTGKTAIAIDTIINQKRFNDAGDDKK 198



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +1

Query: 760 EKKLYCIYVAIGQKRSTVAQI 822
           +KKL+CIYVA+GQKRSTVAQI
Sbjct: 197 KKKLFCIYVAVGQKRSTVAQI 217


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score =  156 bits (378), Expect = 2e-38
 Identities = 74/85 (87%), Positives = 82/85 (96%)
 Frame = +3

Query: 255 ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGD 434
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGD
Sbjct: 55  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGD 114

Query: 435 IVKRTGAIVDVPVGEQILGRVVDAL 509
           IVKRTGAIVDVPVG+ +LGRVVDAL
Sbjct: 115 IVKRTGAIVDVPVGDGLLGRVVDAL 139



 Score =  144 bits (350), Expect = 5e-35
 Identities = 68/86 (79%), Positives = 76/86 (88%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           GNPIDGKGPI    R RV +KAPGIIPR+SVREPM TG+KAV+SLVPIGRGQRELIIGDR
Sbjct: 140 GNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDR 199

Query: 689 QTGKTALAIDTIINQQRFNKGEDEKR 766
           QTGKTA+AIDTIINQ+RFN   D+K+
Sbjct: 200 QTGKTAIAIDTIINQKRFNDAGDDKK 225



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +1

Query: 760 EKKLYCIYVAIGQKRSTVAQI 822
           +KKL+CIYVA+GQKRSTVAQI
Sbjct: 224 KKKLFCIYVAVGQKRSTVAQI 244


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score =  144 bits (350), Expect = 5e-35
 Identities = 68/86 (79%), Positives = 76/86 (88%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           GNPIDGKGPI    R RV +KAPGIIPR+SVREPM TG+KAV+SLVPIGRGQRELIIGDR
Sbjct: 105 GNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDR 164

Query: 689 QTGKTALAIDTIINQQRFNKGEDEKR 766
           QTGKTA+AIDTIINQ+RFN   D+K+
Sbjct: 165 QTGKTAIAIDTIINQKRFNDAGDDKK 190



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +3

Query: 255 ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGN 410
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVV GN
Sbjct: 55  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGN 106



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +1

Query: 760 EKKLYCIYVAIGQKRSTVAQI 822
           +KKL+CIYVA+GQKRSTVAQI
Sbjct: 189 KKKLFCIYVAVGQKRSTVAQI 209


>AL023815-2|CAD92383.1|  146|Caenorhabditis elegans Hypothetical
           protein H28O16.1b protein.
          Length = 146

 Score =  104 bits (249), Expect = 9e-23
 Identities = 48/55 (87%), Positives = 53/55 (96%)
 Frame = +3

Query: 255 ETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKL 419
           ETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+
Sbjct: 55  ETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKI 109



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 571 GARYHSSCVCA*AYADWYQGC*LSGTNWSWS 663
           G R H + VCA     W QG   S  NW+W+
Sbjct: 115 GPRNHPTFVCARTNGYWSQGRRFSCANWTWT 145


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/81 (33%), Positives = 43/81 (53%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQRELIIGDR 688
           G PID +GPI +K+   +  +AP  +     +E + TGIK V+ L P  +G +  + G  
Sbjct: 158 GEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGA 217

Query: 689 QTGKTALAIDTIINQQRFNKG 751
             GKT L ++ I N  + + G
Sbjct: 218 GVGKTVLIMELINNVAKAHGG 238



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 393 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 509
           + + G + L++ G  V  TG  + +PVG + LGR+++ +
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVI 157


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 351 LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 509
           L G  + LE D   + V+     +  GD V RTG  + V +G  I+G + D +
Sbjct: 39  LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGI 91


>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
           protein C38D9.5 protein.
          Length = 1213

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +3

Query: 297 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 473
           + GL  +Q+  + E   G+K +  +L   +       +DK LIK G I+ +   I  VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690

Query: 474 GEQILGR-VVDAL 509
              ++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703


>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
           protein C38D9.5 protein.
          Length = 1213

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +3

Query: 297 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 473
           + GL  +Q+  + E   G+K +  +L   +       +DK LIK G I+ +   I  VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690

Query: 474 GEQILGR-VVDAL 509
              ++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 324 QPGCSSSHKHERYHHQCSRHDQSL*ISLGRGSK--DPLFEDGGDLGS 190
           + G S SHK E +HH+   H  SL      G K   P+ E+ GD  S
Sbjct: 37  EEGTSGSHKPEEHHHK-EHHGHSLYFGKHSGKKHLPPVVENDGDTHS 82


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 324 QPGCSSSHKHERYHHQCSRHDQSL*ISLGRGSK--DPLFEDGGDLGS 190
           + G S SHK E +HH+   H  SL      G K   P+ E+ GD  S
Sbjct: 37  EEGTSGSHKPEEHHHK-EHHGHSLYFGKHSGKKHLPPVVENDGDTHS 82


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQR 667
           G PID   P+  +  + +  +      R+   E +QTGI A++ +  I RGQ+
Sbjct: 130 GKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGISAIDVMNSIARGQK 182


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 509 GNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVNSLVPIGRGQR 667
           G PID   P+  +  + +  +      R+   E +QTGI A++ +  I RGQ+
Sbjct: 118 GKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 170


>U64858-4|AAB18282.2|  151|Caenorhabditis elegans Hypothetical
           protein C16D9.3 protein.
          Length = 151

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 336 PPSPQPGCSSSHKHERYHHQCSRHDQSL 253
           PP  Q  C      ER H  C R+DQS+
Sbjct: 96  PPGSQLKCHFDKSRERLHANCYRYDQSV 123


>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 336 PPSPQPGCSSSHKHERYHHQCSRHDQSL 253
           PP  Q  C   H   +Y+  C R+DQS+
Sbjct: 285 PPGSQSICIFLHDWNKYYADCFRYDQSI 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,038,315
Number of Sequences: 27780
Number of extensions: 419311
Number of successful extensions: 1344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)