Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120096.Seq
         (822 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 4   ASGVTGFPSATIISL*KMSLISARIAGSVARRLPNAATQVS 126
           +SGV     A  +S+  +S+I+AR AG       NAA   S
Sbjct: 628 SSGVLAKKVADRVSMLMISVITARHAGEYVCTAENAAGTAS 668


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 257 LSRSALGAAPRILSSRMVEISAALWVVETCS 165
           L+    G+   ++  R+ + +A  WV+  CS
Sbjct: 55  LAMKLFGSKKALMKERIRQKAAGHWVIHPCS 85


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 257 LSRSALGAAPRILSSRMVEISAALWVVETCS 165
           L+    G+   ++  R+ + +A  WV+  CS
Sbjct: 55  LAMKLFGSKKALMKERIRQKAAGHWVIHPCS 85


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 257 LSRSALGAAPRILSSRMVEISAALWVVETCS 165
           L+    G+   ++  R+ + +A  WV+  CS
Sbjct: 55  LAMKLFGSKKALMKERIRQKAAGHWVIHPCS 85


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 500 YYTPKDLLSDGNVYDSTSTLDNISFLDK 417
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 500 YYTPKDLLSDGNVYDSTSTLDNISFLDK 417
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 668 HADHDQLVPES*QP*YQSA*AHAQTHEE 585
           H  H  + P+  Q   Q+   H Q HE+
Sbjct: 173 HTQHPHMQPQQGQHQSQAQQQHLQAHEQ 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,188
Number of Sequences: 438
Number of extensions: 5371
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)