Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120095.Seq
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 30 0.43
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 28 1.7
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 2.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 2.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 3.0
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 27 3.0
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 27 3.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 4.0
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 5.3
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 26 5.3
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.3
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 26 5.3
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 7.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 7.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.3
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 9.3
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.3
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.3
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +3
Query: 285 NNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDY 464
NN + D+T+ +E+ KK + A L ++L LN +TS+F+ DY
Sbjct: 524 NNVPSGDNTLSTEALQDKKKSEELTAHSKILQAAKKLRLNSTLRTSIFVALV---GSEDY 580
Query: 465 NNMHKSFKELQLKRIQL 515
+ + +L LKR QL
Sbjct: 581 IDAWERVLKLHLKRNQL 597
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 118 ESLHFNVYSINRNVVDVIKCSVTSVAQWNK 207
+ +H N YS+ R +V+ TSV W+K
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDK 648
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +3
Query: 267 DDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK-LQQTSVFMQE-- 437
DD +D D ++ +S +KK++ D+ E + +L K Q + E
Sbjct: 751 DDVKDLKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEFT 810
Query: 438 -KLDRIKNDYNNMHKSFKELQ 497
L++ +NDYN + ++L+
Sbjct: 811 PILEKSENDYNGVKLECEQLE 831
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 KSLLDDAEDSNNAANSDDTMLSESQAI-LKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFM 431
K L + + SN +++ + + + E+ +K+L+ ++ Q +L + ++LQ +
Sbjct: 246 KIQLFEQKRSNYSSDGNISKILETDPTSIKELEEEVETQKRLTALWESKSSELQSEVAAL 305
Query: 432 QEKLDRIKNDYNNM 473
QEKL ++ YNN+
Sbjct: 306 QEKLTSQQSLYNNV 319
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 527 KSLNDDYAKLAAKNARLSNENKVLSNK 607
KSLN+ A L +KN +L N+ +L+ K
Sbjct: 739 KSLNNSLAALESKNKKLENDLNLLTEK 765
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +3
Query: 276 EDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIK 455
+ + N S + LS +Q + ++Q + K Q + L + + +QE L+ +K
Sbjct: 297 KQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVK 356
Query: 456 NDYNNMHK--SFKELQLKRIQLKRH*NRSMMIT 548
ND N+ + + E ++K + K + N+ +I+
Sbjct: 357 NDEKNLREMNANYETEMKEARQKLN-NKEALIS 388
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 527 KSLNDDYAKLAAKNARLSNENKVLSN-KNIELIKHKNLLQNE 649
K+ D + L K+ L N + L++ + ++ IKHK++ QNE
Sbjct: 189 KTRKVDASALEKKSCLLPNSSGTLTDQRGLDTIKHKSIEQNE 230
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 118 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 213
+ LH N+YS+ R ++ V+ SV W +N
Sbjct: 78 KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = -2
Query: 245 TLAKEAASKLSFILF--HCATLVTL-HLITSTTFRFML*TLKC-KLSTLHRGHGIFFRFL 78
+++++ AS+L + LF H A L++L +L T ML + + LHRGH + F
Sbjct: 281 SISQQKASELMYKLFSEHIAFLLSLKNLPEEATLDCMLSICQVFENDNLHRGHSDEYTFA 340
Query: 77 ILRMHIE 57
+L +E
Sbjct: 341 MLEQLLE 347
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +3
Query: 318 SESQAILKKLQIDIAEQTQLNIKRQLDL--NKLQQTSVFMQEKLDRIKN---DYNNMHKS 482
+ QA K +DI E + QL++ +K ++ V + ++IK N+HK+
Sbjct: 208 ARDQARKKSRTVDILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLNIHKN 267
Query: 483 FKELQLKRIQ 512
F+++Q + IQ
Sbjct: 268 FQKIQSELIQ 277
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +3
Query: 324 SQAILKKL-QIDIA-EQTQLNIKRQLD-LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKE 491
SQ +L+ L QI+++ +Q L I+ +NKL+QT M K + ++ + N+ K+ +
Sbjct: 66 SQLVLQSLNQINMSMQQVALGIQDYASRINKLEQTMSDMNLKFEALQKEQNSNTKTLAD 124
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 455 KRLQQHAQIL*RIAT-KTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHK 631
K ++ ++L + T + S++K ++ L +N + L+ + K
Sbjct: 70 KETKERKEMLKKKCTDELESSKKKIEELVSSIESFQGENGEAKTGSTSLTRSASATVSRK 129
Query: 632 NLLQNEYTTLQSYK 673
+ LQ +Y+T SYK
Sbjct: 130 SSLQEKYSTRFSYK 143
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 267 DDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK 407
D E++ A+ S D L Q +KL +D +++ +KRQ+DL K
Sbjct: 14 DIEEETPLASKSFDPTLF--QHARRKLSVDSTKKSPKRLKRQVDLQK 58
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/80 (20%), Positives = 39/80 (48%)
Frame = +3
Query: 282 SNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKND 461
S+ + ++T +S+ QI+ E+ I + D KLQ+ + E+ +++ +
Sbjct: 176 SSQTVHEENTAALDSEIDELMKQINEKEEKIEEISDETD--KLQKLLRELDEEKEKVYAE 233
Query: 462 YNNMHKSFKELQLKRIQLKR 521
+ + + Q+K++ L+R
Sbjct: 234 EQEFYNNLNQFQIKKLSLER 253
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 666 DCNVVYSFCNKFLCLINSIFLFDK 595
+C VYS+ N LCLI S +F K
Sbjct: 35 NCLEVYSYENNRLCLITSANIFAK 58
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 491 IATKTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTTLQSY 670
IA + E+ L++ + KLA++ L+NE ++ K I+ K + N L+ Y
Sbjct: 3182 IAEYLSKLERVFHLLSE-WEKLASREYSLANEMDLIKKKIIDWRKFELSNWNNLLKLEEY 3240
Query: 671 K 673
K
Sbjct: 3241 K 3241
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 9.3
Identities = 20/83 (24%), Positives = 35/83 (42%)
Frame = +3
Query: 231 LFGQRVV*KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKL 410
L G+R + L D ED NN+ + + ++ L+ Q + L IK+Q + +L
Sbjct: 92 LLGRRRLDDLLKDKIEDQNNSLEKTEFIALQNANSLQDTQAKLRLDPLLAIKQQ-EQKQL 150
Query: 411 QQTSVFMQEKLDRIKNDYNNMHK 479
Q + LD + H+
Sbjct: 151 QTLMEKRKYSLDSDRKSKERRHR 173
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 9.3
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +1
Query: 40 CKHQLCSMCXXXXXXXXXXPCPLCRV-ESLHFNVYSINRNVVDVIKC----SVTSVAQWN 204
C H C C CPLCR E + + +I+ +++ +K + + N
Sbjct: 375 CSHVFCLHCLIILQKQKVDFCPLCRAKEVMKADSRNIDHALMNFMKTYFPREIKEKFEEN 434
Query: 205 KINDNFDAASLASVLFEKVC 264
+ ND F +S++ V + C
Sbjct: 435 E-NDTFTPSSISVVSGQNNC 453
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/33 (30%), Positives = 12/33 (36%)
Frame = +1
Query: 28 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 126
+L CKH C CPLCR +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 255 KSLLDDAEDSNNAANSDDTMLSESQAILKK-LQIDIAEQTQLNIKRQLDLNKLQQTSVFM 431
+ L + + S++ + D+ S+ Q + K+ +++ + Q N+ + DLN L+Q S
Sbjct: 38 QELQEKVKFSSSRFYNKDSTYSKDQGLAKESAALELQKLKQENVLLRKDLNNLEQISDCY 97
Query: 432 QEKLDRI 452
+ +D I
Sbjct: 98 AKGMDDI 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,674
Number of Sequences: 5004
Number of extensions: 43313
Number of successful extensions: 194
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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