Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120095.Seq
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 33 0.26
10_05_0100 - 9161144-9161682,9161860-9162058 33 0.34
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 32 0.59
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632... 32 0.59
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829... 31 1.0
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 31 1.4
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 1.8
08_01_0532 - 4611650-4612706,4613405-4613757 30 2.4
01_05_0291 - 20515206-20516262,20516961-20517313 30 2.4
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 28 7.3
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 28 9.7
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 33.1 bits (72), Expect = 0.26
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Frame = +3
Query: 306 DTMLSESQAILKKLQIDIAEQTQL-------NIKRQLDLNKLQQTSVFMQEKLDRIKNDY 464
++ LS++Q LKKL ++A + Q N + Q +L L Q QE+L++ + +
Sbjct: 488 ESELSKAQDDLKKLTDEMATEVQKLSSAEARNSEIQSELEALDQKVKMQQEELEQKQKEL 547
Query: 465 NNMHKSFKELQLKRIQ 512
+ + +F+E Q KR+Q
Sbjct: 548 KSFNLTFQEEQDKRLQ 563
>10_05_0100 - 9161144-9161682,9161860-9162058
Length = 245
Score = 32.7 bits (71), Expect = 0.34
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 515 EKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTTLQSYKC 676
E +KS KLAA+ +L EN L N+N EL + ++N++ TL C
Sbjct: 167 EDEVKSPEPSIHKLAAQVKKLRKENIELRNRNAELGVELSEIRNDFDTLSCGLC 220
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 258 SLLDDAEDSNNAANSDDTMLS-ESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQ 434
S+L E + N D + E+Q + KLQ+D + N+K +L+ + Q+ + +Q
Sbjct: 808 SMLQMDESRSLITNLKDELEQVEAQKVELKLQMDESRSLITNLKDELEQVEAQKVELKLQ 867
Query: 435 EKLDRIKNDYNNMHKSFKELQLKRIQLKRH 524
+D ++ N+ ++++ ++++LK +
Sbjct: 868 --MDESRSLITNLKDELEQVEAQKVELKEN 895
>07_03_1576 -
27862043-27862129,27862935-27862988,27863042-27863243,
27865015-27865249,27865338-27865404,27865489-27865639,
27866898-27866957,27867402-27867466
Length = 306
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +1
Query: 31 LDTCKHQLCSMCXXXXXXXXXXPCPLCR-----VESLHFNVYSINRNVVDV 168
L TC H +C C CP CR V S +Y+ NR++VD+
Sbjct: 178 LPTCSHAMCIKCYRDWRSRSQS-CPFCRDSLKRVNSADLWIYTDNRDIVDI 227
>03_06_0331 -
33181757-33181795,33182325-33182453,33182941-33182967,
33183459-33183545,33183827-33183975,33185467-33185521,
33185596-33187584,33188705-33188782
Length = 850
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/87 (22%), Positives = 39/87 (44%)
Frame = +3
Query: 255 KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQ 434
K L + +D N+ D + +++ A + + + D++ L K +N Q+ F +
Sbjct: 44 KFTLKEIQDRWNSLLYDPEISTQASARMVEYENDLSTSNPLKAKV---INAKQKDLSFQK 100
Query: 435 EKLDRIKNDYNNMHKSFKELQLKRIQL 515
K+D +KN Y M K + + L
Sbjct: 101 RKIDSVKNQYYAMRKRVRNEPCSTVDL 127
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +3
Query: 300 SDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHK 479
S + L++S++ + KL +++ E ++N L ++KLQ MQE L + ++ K
Sbjct: 509 STEEALTDSRSEVSKLSVELDEANRMNQDLVLQISKLQDEFNEMQEGLTNKLGEVESVSK 568
Query: 480 SFKE 491
+ +
Sbjct: 569 ALSD 572
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/103 (21%), Positives = 48/103 (46%)
Frame = +3
Query: 267 DDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLD 446
+D + +NA + L + L + ++ I + + +L+L L+ T V +EK+
Sbjct: 398 NDLDTKSNALKKWEESLQNDEKQLSEQKLQIENERKQAEMYKLELESLKATVVAEKEKIL 457
Query: 447 RIKNDYNNMHKSFKELQLKRIQLKRH*NRSMMITQNLRLKTPD 575
+ +N+ + +E + QLK+ + M + +L +T D
Sbjct: 458 QEQNNLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLSEETED 500
>08_01_0532 - 4611650-4612706,4613405-4613757
Length = 469
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/76 (32%), Positives = 34/76 (44%)
Frame = +3
Query: 228 RLFGQRVV*KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK 407
R GQ+ K+ LD SN +SDD ES L K Q + N KR L++
Sbjct: 337 RPMGQKAAKKAALDAKIKSNGLGSSDDGHSKESPIQLDKFDRYSKFQEENNDKRMKLLDR 396
Query: 408 LQQTSVFMQEKLDRIK 455
++ S EKL+ K
Sbjct: 397 QEKIS---SEKLEATK 409
>01_05_0291 - 20515206-20516262,20516961-20517313
Length = 469
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/76 (32%), Positives = 34/76 (44%)
Frame = +3
Query: 228 RLFGQRVV*KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK 407
R GQ+ K+ LD SN +SDD ES L K Q + N KR L++
Sbjct: 337 RPMGQKAAKKAALDAKIKSNGLGSSDDGHSKESPIQLDKFDRYSKFQEENNDKRMKLLDR 396
Query: 408 LQQTSVFMQEKLDRIK 455
++ S EKL+ K
Sbjct: 397 QEKIS---SEKLEATK 409
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 402 NKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQL 500
N+L+QT V + ++L + DY+ H + ++ QL
Sbjct: 715 NRLRQTRVPVHQRLGPVNQDYDQEHDNSRKTQL 747
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 390 QLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRIQLK 518
Q D K Q+ +++LD+ K +YN + K+ EL+ + ++
Sbjct: 981 QEDYKKTQEMMDNHKDELDKTKVEYNKLKKAMDELRSSEVDVE 1023
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,050,447
Number of Sequences: 37544
Number of extensions: 238335
Number of successful extensions: 791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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