Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120095.Seq
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.012
SB_30094| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       31   1.1  
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              31   1.1  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        31   1.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        30   2.4  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   3.2  
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_21635| Best HMM Match : Lysine_decarbox (HMM E-Value=1.4)           29   4.3  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)                      29   5.6  
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)                29   5.6  
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)              29   5.6  
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)                  28   7.5  
SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)                   28   7.5  
SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)                   28   7.5  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = +2

Query: 512  TEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKN 634
            TE+ LKS + +   L AK ARL NENK L+++N++L + +N
Sbjct: 1892 TEEELKSKSGEVDILKAKVARLENENKELNDENMKLEQKRN 1932


>SB_30094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 518 KALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTTLQSY 670
           +A K +N D      ++ ++ N N +L    +  +KH N +QN+YTT   Y
Sbjct: 54  EAKKRVNSDSIS-KQRDLKILNSNTILLFITLPGVKHINRVQNKYTTFNCY 103


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/75 (24%), Positives = 40/75 (53%)
 Frame = +3

Query: 273  AEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRI 452
            A+D +    S    LSE QA+  +L+  + + +++  + + +   LQQ  + ++++ D I
Sbjct: 1097 AKDLDEVNASLQARLSELQAVNNELEEKLMDLSRVGEELKSENEGLQQKCLDLEKQRDTI 1156

Query: 453  KNDYNNMHKSFKELQ 497
            K D  ++ K  + L+
Sbjct: 1157 KQDLADVQKEHENLK 1171


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 40  CKHQLCSMCXXXXXXXXXXPCPLCRV 117
           C+H+ C MC           CP+CR+
Sbjct: 52  CEHEFCKMCFTQNVQEANLQCPMCRI 77


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 488  RIATKTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNE 649
            R+  +  +++  +  + DD+ K+  +N    +ENK+LS +  +L   K   ++E
Sbjct: 1363 RLKQELQASKNKIAKIEDDHKKIHQQNIERDHENKMLSKRVADLTALKEKFEHE 1416



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/90 (24%), Positives = 48/90 (53%)
 Frame = +3

Query: 255  KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQ 434
            K L    ++     +S +T ++E+++++K+L     E    NIK +L L K+Q++    Q
Sbjct: 1755 KELYSAQQEIQPLKDSFNTAVAENESLVKELN----EANNKNIKLELTLEKMQKSQAQNQ 1810

Query: 435  EKLDRIKNDYNNMHKSFKELQLKRIQLKRH 524
             +++   + Y+   +S +EL   R +L+ +
Sbjct: 1811 YQVEDALSKYS---RSEEELMQTRRKLQEY 1837


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 491 IATKTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNE 649
           +AT+  + EK  +SLN+    L+A+  +L   N  L  +   L   K  LQ E
Sbjct: 518 VATEKQNLEKMRQSLNEQVEGLSAEKEKLQAANNELQRQRDNLEDDKEDLQRE 570



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/87 (19%), Positives = 39/87 (44%)
 Frame = +3

Query: 261  LLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEK 440
            L D  +   N     D    E +  +++LQ  + +Q +   +    + KLQ+    +QE+
Sbjct: 1716 LQDRMQQMKNEQADADVRRMELEGQIRQLQQILRQQKEAEEELVARIGKLQEEKRELQER 1775

Query: 441  LDRIKNDYNNMHKSFKELQLKRIQLKR 521
            L + +       +  +EL+   ++L++
Sbjct: 1776 LAKFQRSVAAAEQEKRELERAHVRLEK 1802


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 279 DSNNAANSDD-TMLSESQAILKKLQIDIAEQTQLNI 383
           D+   A SD+ T + +  A+LKKL ID+  +T  NI
Sbjct: 369 DAFTIAGSDEVTFILKKMAVLKKLPIDVLNRTLFNI 404


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 433 CIKTLVCCNLFKSNCRLMLSCVCSAMSICSFFSIACDS 320
           C+  + CC L    C L++SC    M  CS   +AC S
Sbjct: 4   CVLLMPCCVLLMPCCVLLMSCCVMLMWYCS-CRVACCS 40


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/66 (24%), Positives = 35/66 (53%)
 Frame = +3

Query: 321  ESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQL 500
            + Q IL  LQ ++  + Q   +   +LN++++ +V  + KL   +   N++ +  K+L+ 
Sbjct: 832  DKQEILS-LQANLQAEIQAKTQLSEELNRMKEANVTTERKLAESEAQNNSLREEIKKLKR 890

Query: 501  KRIQLK 518
               Q+K
Sbjct: 891  DLEQMK 896


>SB_21635| Best HMM Match : Lysine_decarbox (HMM E-Value=1.4)
          Length = 569

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/68 (23%), Positives = 36/68 (52%)
 Frame = +3

Query: 309 TMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFK 488
           T+ +E  ++ + L+  + E T+ +++R   LN ++        K +++KN +NN  K   
Sbjct: 165 TVKNEFASLQRYLENCVHETTEPSVRR-CQLNSVRDIDAAWP-KFEKLKNQFNNNSKEIS 222

Query: 489 ELQLKRIQ 512
              +KR++
Sbjct: 223 MNDIKRLE 230


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +2

Query: 596  LSNKNIELIKHKNL---LQNEYTTLQSY 670
            LSNKN+EL K K L   LQN+ ++L  Y
Sbjct: 1575 LSNKNMELAKEKELSTALQNQLSSLSGY 1602


>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
          Length = 1030

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 500 KTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKN 610
           K +  E     +N D A+L  +N +LS EN++L  +N
Sbjct: 137 KISEFEAQNAKVNQDKAELLERNEKLSKENELLQEEN 173


>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
          Length = 434

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = +3

Query: 255 KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAE--QTQLNIKRQLDLNKLQQTSVF 428
           ++L D+AE   N        + + + ++KKLQ+D  E       ++ QL  NK + +   
Sbjct: 324 RALADEAESILNNMEDTTEQIFQEKKVVKKLQVDEEEIKHRISELQNQLAKNKSKLSETQ 383

Query: 429 MQ-EKLDRIKNDYNNMHKSFKELQLKRIQLKRH*NRSMM--ITQNLRLKTPD 575
            + EKL+ I+ D      S  E  +K I   +   + M+     NL L+  D
Sbjct: 384 ERCEKLE-IRYDEEKQRLSLVEDTIKTITQSKERVKMMVNNFAPNLNLENFD 434


>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 258 SLLDDAEDSNNAANSDDTMLSESQA---ILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVF 428
           S+ DD+E++ N A++DDT+  +  A     +K  I IAE T    K   D+       + 
Sbjct: 12  SITDDSEETENHASTDDTVKKKVHADERSSRKYAIPIAELTTEMAKLLRDVKVFFTKDIN 71

Query: 429 MQEK 440
           ++ K
Sbjct: 72  LERK 75


>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
          Length = 725

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +3

Query: 273 AEDSNNAANSDDTMLSESQAI-LKKLQIDIAEQTQLNI-KRQLDLN--KLQQTSVFMQEK 440
           AE+S    +  D +    + + LKK     A +TQL+  K+Q +    K ++  V ++ +
Sbjct: 504 AEESQQLKDEMDVLRHMQEKVDLKKAN---ALKTQLDTYKKQAEFEAKKAKEKLVNLEGE 560

Query: 441 LDRIKNDYNNMHKSFKELQLKRI 509
            +R+K +  N+ +  +ELQL ++
Sbjct: 561 NERVKQEKENLREQVEELQLTQV 583


>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
          Length = 216

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +3

Query: 300 SDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHK 479
           S +T    SQ+     Q+D +E+    ++   +L K  + +    ++ ++IK+DY  ++ 
Sbjct: 55  SQNTHKEPSQSESTTQQLDQSEKFGNQVEEIHNLTKQLKQAKLELDQANKIKDDYEKLNS 114

Query: 480 SFKELQLKRIQL 515
             K L+ K I L
Sbjct: 115 KTKSLEDKIIYL 126


>SB_30869| Best HMM Match : DUF164 (HMM E-Value=0.18)
          Length = 442

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +3

Query: 240 QRVV*KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQT 419
           ++++ K    + E  NN         +E  A   +L+   AE+T++    Q +LN L+ T
Sbjct: 170 EQILEKQKFLENELDNNKEKEKKVGAAERLAAKLRLEYQDAERTRIQF--QDELNTLKYT 227

Query: 420 SVFMQEKLDRIKNDYNNMHKSF--KELQLKRIQLKR 521
                + L+  +  YN + K    +  +L+R+Q +R
Sbjct: 228 VDRTAKDLEATRQKYNELKKEVLTRAERLERVQQER 263


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 503  TNSTEKALKSLNDDYAKLAAKN----ARLSNENKVLSNKNIELIKHKNL 637
            +N+  +  KS N D  KL + N    A+ +N NK++SN  +EL K  N+
Sbjct: 1713 SNNGVELAKSTNID--KLVSNNEVELAKSTNINKLVSNNEVELAKSTNI 1759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,861,699
Number of Sequences: 59808
Number of extensions: 327952
Number of successful extensions: 1086
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)