Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120095.Seq
         (786 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.5  
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    25   2.7  
AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.    23   8.1  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   8.1  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 17/83 (20%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +3

Query: 318 SESQAILKKLQIDIAEQTQLNIKRQLDLNKL--QQTSVFMQEKLDRIKNDYNNMHKSFKE 491
           S+S   + + ++ I +  ++  +R+L+  +   ++T   ++EK  R++     +  +  E
Sbjct: 483 SKSALSIAESELKICQHDEVTERRKLESLRYSYEETEKDLEEKRARLQTLEEALPVTRTE 542

Query: 492 LQLKRIQLKRH*NRSMMITQNLR 560
           L+  + +L+ + N    +TQ LR
Sbjct: 543 LETAKQKLQENANEERELTQTLR 565


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 359 CRTNAAQH*TTIRFKQITTN*RFYARKVGQN*KRLQQHAQIL*RIATKTNSTEKALKS 532
           C  +  Q   T  +   ++N R Y   V ++ K  ++HAQ+L +I  K    E+ L++
Sbjct: 271 CHQHEPQEIRTCHWGFNSSNWRSYIH-VAESEKNREEHAQVLDKIWLKEREIEQELEA 327


>AY659931-1|AAT51799.1|  167|Anopheles gambiae lysozyme i-1 protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 379 LSCVCSAMSICSFFSIACDSD 317
           LSC+C A S C   S+ C  D
Sbjct: 42  LSCICEASSGCD-ASLRCSGD 61


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 381  IKRQLD-LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRIQLK 518
            ++ +LD L K+Q  ++   +KLDR+     + ++ F+  + K  + K
Sbjct: 1010 LQSKLDTLEKIQTPNMKAMQKLDRVTEKIQSTNEEFEAARKKAKKAK 1056


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,512
Number of Sequences: 2352
Number of extensions: 10977
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)