Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120095.Seq
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.46 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.60 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.60 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 677 YIYMIVMLCTRFVINFCV*SIQYFYLIKPYFRYSIW 570
           +I   VM  T  ++N C  S+  +  IK   RY  W
Sbjct: 101 WIAFDVMCSTASILNLCAISLDRYIHIKDPLRYGRW 136


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 581 NENKVLSNKNIELI-KHKNLLQ 643
           NEN++L  +NIE++ K+K  LQ
Sbjct: 329 NENRLLDRRNIEVVAKNKETLQ 350


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 662 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWR 567
           V+ CT  ++N C+ S+  F  I    +Y + R
Sbjct: 122 VLSCTASILNLCMISVDRFCAITKPLKYGVKR 153


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 500 KTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTT 658
           K +    A KS  D   +  +  + L+N   VL  ++  L  H NLL N Y+T
Sbjct: 362 KPSPVTGASKSHGDLELRQRSSKSLLAN---VLDLEDNALASHNNLLNNVYST 411


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 581 NENKVLSNKNIELIKHKN 634
           NEN+ L  +NIE++   N
Sbjct: 328 NENRPLKRRNIEIVAKNN 345


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 624 NTKIYYKTSTQHYNH 668
           +++I+Y TS Q+Y H
Sbjct: 199 SSEIFYTTSQQYYGH 213


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 662 VMLCTRFVINFCV*SIQYFYLIKPYFRY 579
           V+  T  ++N CV S+  ++ I   F Y
Sbjct: 127 VLFSTASILNLCVISLDRYWAITDPFTY 154


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 662 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWRF*PQVL 549
           V+ CT  ++N C  ++  ++ I     Y+  R   +VL
Sbjct: 117 VLCCTASILNLCAIALDRYWAITDPINYAQKRTLKRVL 154


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 662 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWRF*PQVL 549
           V+ CT  ++N C  ++  ++ I     Y+  R   +VL
Sbjct: 117 VLCCTASILNLCAIALDRYWAITDPINYAQKRTLKRVL 154


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 488 RIATKTNSTEKALKSLNDDYAKLAAKN 568
           R A K+N T   LKS ND Y +   KN
Sbjct: 143 RGAGKSNITMYDLKSHNDIYCEKYEKN 169


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 662 VMLCTRFVINFCV*SIQYFYLIKPYFRYSIWRF*PQVL 549
           V+ CT  ++N C  ++  ++ I     Y+  R   +VL
Sbjct: 117 VLCCTASILNLCAIALDRYWAITDPINYAQKRTLKRVL 154


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 515 EKALKSLNDDYAKLAAKNARLSNENKVLSNKNIE 616
           +KA      DY  L   N  +S E+  LS  NI+
Sbjct: 713 KKAAGDTPGDYTDLKLSNPDISVEDGTLSINNIQ 746


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 599 IKPYFRYSIWR 567
           IKPY  Y +WR
Sbjct: 139 IKPYDEYYVWR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,648
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)