Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120095.Seq
(786 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38150.1 68418.m04598 expressed protein 33 0.28
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 31 0.66
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4... 31 0.87
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 31 1.1
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 30 1.5
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 30 2.0
At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi... 30 2.0
At5g38130.1 68418.m04594 transferase family protein similar to a... 29 2.6
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 29 4.6
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 6.1
At5g27330.1 68418.m03263 expressed protein 28 8.1
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa... 28 8.1
At1g21810.1 68414.m02729 expressed protein 28 8.1
>At5g38150.1 68418.m04598 expressed protein
Length = 574
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Frame = +3
Query: 264 LDDAEDSNNAANSDDTMLSESQAILK----KLQIDI-AEQTQLNIKRQLDLNKLQQTSVF 428
L+ + S NAA ++ + E + + K K ++DI ++++LN K +L K++ T
Sbjct: 349 LEKIKKSRNAAKKEEFLFKEEKTVTKAETQKTKLDIDKKESELNSKLD-ELEKVKHTEAL 407
Query: 429 MQEKLDRIKND 461
+ EKL+ + D
Sbjct: 408 VLEKLESLVED 418
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 494 ATKTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTTLQS 667
+T+ + E L+S + L+A ENK +S+KN+E + QN L +
Sbjct: 153 STRASELEAQLESSKQQVSDLSASLKAAEEENKAISSKNVETMNKLEQTQNTIQELMA 210
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 494 ATKTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQN 646
+T+ + E L+S + L ENK +S+KN+E++ QN
Sbjct: 329 STRVSELEAQLESSEQRISDLTVDLKDAEEENKAISSKNLEIMDKLEQAQN 379
>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
from [Arabidopsis thaliana]
Length = 1529
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 500 KTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTTLQ 664
K TEK + L + +L K L +ENKVL + + + +K L + LQ
Sbjct: 1019 KLEDTEKKAQQLQESVTRLEEKCNNLESENKVLRQQAVSIAPNKFLSGRSRSILQ 1073
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 443 GQN*KRLQQHAQIL*RIATKTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELI 622
G+ KR+ + +I+ + + + +K + L DY +L + RLS++ K N +
Sbjct: 510 GREDKRMSRDNEIIKTLKEELENVKKKMSELQSDYNELQQEYERLSSKQKSSHNWGLRWQ 569
Query: 623 KHKNLLQNE 649
K K Q +
Sbjct: 570 KVKKSFQTK 578
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 500 KTNSTEKALKSLNDDYAKLAAKNARLSNENKVLSNKNIELIKHKNLLQNEYTTLQ 664
K TEK + L + ++ K + L +ENKVL + + + +K L + LQ
Sbjct: 1024 KLEETEKKGQQLQESLTRMEEKCSNLESENKVLRQQAVSMAPNKFLSGRSRSILQ 1078
>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
family protein similar to SP|P50532 Chromosome assembly
protein XCAP-C {Xenopus laevis}; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/88 (21%), Positives = 38/88 (43%)
Frame = +3
Query: 228 RLFGQRVV*KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNK 407
+L GQ+ + + D + +N N + + +Q ++KKL I E T+ + + +
Sbjct: 840 KLKGQKAKVEKIQTDIDKNNTEINRCNVQIETNQKLIKKLTKGIEEATREKERLEGEKEN 899
Query: 408 LQQTSVFMQEKLDRIKNDYNNMHKSFKE 491
L T + +K I+ Y + E
Sbjct: 900 LHVTFKDITQKAFEIQETYKKTQQLIDE 927
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 339 KKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRI 509
+ L + + TQ + Q K QQ ++ L K+DY N+ KS EL+ R+
Sbjct: 898 ENLHVTFKDITQKAFEIQETYKKTQQLIDEHKDVLTGAKSDYENLKKSVDELKASRV 954
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/84 (22%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Frame = +3
Query: 288 NAANSDDTMLSESQAILKKLQIDIAEQ-TQLN-IKRQLDLNK--LQQTSVFMQE---KLD 446
N N+ L +A ++K+Q DI + T++N Q++ N+ +++ + ++E + +
Sbjct: 832 NIENAGGEKLKGQKAKVEKIQTDIDKNNTEINRCNVQIETNQKLIKKLTKGIEEATREKE 891
Query: 447 RIKNDYNNMHKSFKELQLKRIQLK 518
R++ + N+H +FK++ K +++
Sbjct: 892 RLEGEKENLHVTFKDITQKAFEIQ 915
>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 396 DLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRIQLK-RH*NRSMMITQNLR 560
DLNK Q + L R+ ++ N+H++F E K Q+ RH R + + LR
Sbjct: 270 DLNKAQHSYNRTAMSLQRVLDEKKNLHQAFAEETKKMQQMSLRHIQRILYDKEKLR 325
>At5g38130.1 68418.m04594 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 462
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 255 KSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLN 404
K++LD +NN +++D +S QA++ L + I + LN + + N
Sbjct: 256 KNILDLKAKANNEIDTNDLKISSLQAVVAYLWLSIIRHSGLNREEETQCN 305
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +3
Query: 288 NAANSDDTMLSESQAILKKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYN 467
+A N DT+ S+ +L+KLQ E +++RQ ++ L+Q +VF++++ + D
Sbjct: 86 SADNVSDTLSSDYDVMLRKLQ--ETELRNEDLERQ--VSNLKQETVFLRDQNMEVAGDIE 141
Query: 468 NMHKSFKELQLKRIQLK 518
+E LK + K
Sbjct: 142 GKRNEDRE-HLKGLMTK 157
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/68 (22%), Positives = 35/68 (51%)
Frame = +3
Query: 363 EQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRIQLKRH*NRSMM 542
++ Q I +L +N L+ + + EK+ ++ND KE+ ++ L++H
Sbjct: 169 KKLQYMINLELKINFLENKNASIFEKIKLLENDKTMRMNEKKEIMIRIESLEQHAELRDA 228
Query: 543 ITQNLRLK 566
+T++L ++
Sbjct: 229 LTEHLHVE 236
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/100 (20%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Frame = +3
Query: 231 LFGQRVV*KSLLDDAEDSNNAANSDDTM----LSESQAILKKLQIDIAEQTQLNIKRQLD 398
L ++ V +S L+ NN+ + M S+ + ++++L + E Q + ++ +
Sbjct: 331 LVKEKTVKESELEGLMVENNSIKKEIEMAMVQFSDKEKLVEQLLREKNELVQRVVNQEAE 390
Query: 399 LNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRIQLK 518
+ +L + + + + +++ DYN+ K+ ++L QLK
Sbjct: 391 IVELSKLAGEQKHAVAQLRKDYNDQIKNGEKLNCNVSQLK 430
>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 211
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 28 ELDTCKHQLCSMCXXXXXXXXXXPCPLCR--VESLH 129
E+ TC H C CPLCR V+ LH
Sbjct: 175 EMPTCSHYFHEPCLTEWLTRDNNSCPLCRKPVDKLH 210
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +3
Query: 339 KKLQIDIAEQTQLNIKRQLDLNKLQQTSVFMQEKLDRIKNDYNNMHKSFKELQLKRIQLK 518
K+ +++ I+ + +L K++ ++ D IK+ Y F+E+++K +K
Sbjct: 375 KRFSLELEAVVGDKIEMEDELEKMEAEKAELKISFDVIKDQYQESRVCFQEVEMKLEAMK 434
Query: 519 R 521
R
Sbjct: 435 R 435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,397
Number of Sequences: 28952
Number of extensions: 210798
Number of successful extensions: 728
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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