Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120094.Seq
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.85 
SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)                       30   2.6  
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 554 FFGSFHRCLQFR*PFDFVAFD-TFHFYTLIYNICL*GVF 441
           FF  F RC Q+  P  F  F   F +   ++++CL GVF
Sbjct: 22  FFAMFTRCFQYVYPVFFAMFTRCFRYVYPVFSLCLPGVF 60


>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
          Length = 518

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 43  YLLIRGDYESSSELKSLRDLNPWVQNTLLKLL 138
           Y L+RG  +SS E+KS+R  +PW    LL L+
Sbjct: 68  YYLVRGFLKSSEEMKSIRH-SPWSVVALLTLV 98


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 539 EKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 646
           +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 89  QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,705,244
Number of Sequences: 59808
Number of extensions: 398428
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)