Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120093.Seq
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 41 0.001
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 37 0.015
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 31 0.76
11_03_0128 - 10437407-10438049,10438097-10438272 29 3.1
09_06_0228 + 21706118-21706252,21706327-21706406,21706742-217068... 29 3.1
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 29 3.1
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 3.1
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 29 4.1
01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555... 28 7.1
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 2 AWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEP 178
AW + V+ LAD G + KAL L +L G G RS+RF+++ + KV N+E
Sbjct: 87 AWAKSYPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEE 146
Query: 179 DG 184
G
Sbjct: 147 GG 148
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 WGAQHNTKGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFSMVIVDSKVQDLNVE 175
W + K + D G+F K+LDL +L L G RS R+S + D K++ NVE
Sbjct: 123 WAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAFNVE 180
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -1
Query: 209 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRAAADWCPGPEP 72
RRE +T H PHSDL P R P RT + + R P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 48 PIPAATSSRLWTWAPICRRSEVSAPKGSRWSSLTA 152
P P A+S L +W C RS +S+P S W TA
Sbjct: 233 PSPTASSESLGSWGSGC-RSHLSSPTCSSWWRTTA 266
>09_06_0228 +
21706118-21706252,21706327-21706406,21706742-21706866,
21706960-21707084,21707162-21707380,21707458-21707580,
21707661-21707761,21707847-21707899,21707972-21708174
Length = 387
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 190 ASAIGLHIQILDLAVNDDHREPFGAETSERRQIGAQVQSLDEVAAGIG*HTH 35
A +G + I+ AV D+ PFG ++S R +G SL G+ TH
Sbjct: 113 AGNLGNLLLIVVPAVCDEDGNPFGKDSSRCRSLGLSYSSLSMALGGLYIWTH 164
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 401 AQSKCQENCREICVNSRFHVIY--LLRLLAEQFYV*GNLLINRTH-LTMDLNRIV 556
+QS CQE R++C + VIY L +L + Y G+ NR L +L+ I+
Sbjct: 767 SQSACQEGIRQLCETFAYKVIYNDLSHVLLDSLYA-GDTASNRVEPLLRELDPIL 820
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 101 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 217
PL G S F+ +I S +Q +V+ DGT SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 732 EIFFFFDLAHYMNNERHYFENFLILTKT 649
++FFF D Y+ N+ F++FL +T T
Sbjct: 288 QVFFFLDWVKYLLNDAKLFKSFLRITLT 315
>01_07_0259 -
42353992-42354111,42354255-42354385,42355484-42355571,
42356439-42357282,42357354-42357934,42358962-42359159
Length = 653
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 255 ICNAILHTAYFTLILSAREQDRPVPSGSTF 166
+C A A L+L +R RPVP GS F
Sbjct: 185 VCVATTGLALAALLLGSRHYRRPVPKGSPF 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,572,306
Number of Sequences: 37544
Number of extensions: 371004
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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