Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120093.Seq
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +2

Query: 104 LGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKIKVK*AVCNIALQIK*HKNEIKA 283
           +  FR +  S   +D+   D+N  P    L C+  +K+ VK +    A +++ H+ +I+ 
Sbjct: 306 IASFR-RPISHFSIDNSCFDINDPPTQRSLMCTPVEKMFVKNS--RSAPEMRVHETKIQP 362

Query: 284 ILPAFVTFSDALT 322
            LP+    +DA T
Sbjct: 363 FLPSPSPSNDATT 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,083
Number of Sequences: 27780
Number of extensions: 329335
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)