Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120093.Seq
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 283 RLNFVFMLFNLQCDITHCL 227
           RLN +FM  +LQ   TH L
Sbjct: 484 RLNLIFMSSSLQWSSTHTL 502


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 283 RLNFVFMLFNLQCDITHCL 227
           RLN +FM  +LQ   TH L
Sbjct: 522 RLNLIFMSSSLQWSSTHTL 540


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 48  PIPAATSSRLWTWAPICRRSEVSAPKGSRWS 140
           P+P A +  + + +  C++ + +A  GSR++
Sbjct: 564 PLPLARTPSVMSASSTCKKDKKNAGSGSRFT 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,691
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)