Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120093.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong s...    44   8e-05
At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong s...    44   1e-04
At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong s...    43   2e-04
At1g18740.1 68414.m02337 expressed protein                             31   1.1  
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ...    30   1.5  
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ...    30   1.5  
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara...    29   4.5  
At3g55060.1 68416.m06115 expressed protein contains weak similar...    29   4.5  
At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit...    29   4.5  

>At1g65980.1 68414.m07486 peroxiredoxin type 2, putative strong
           similarity to type 2 peroxiredoxin [Brassica rapa subsp.
           pekinensis] GI:4928472; contains Pfam profile: PF00578
           AhpC/TSA (alkyl hydroperoxide reductase and
           thiol-specific antioxidant) family
          Length = 162

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2   AWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEP 178
           AWG  +     V+ +AD SG +   L L  +L   G G RS+RF++++ D KV   NVE 
Sbjct: 87  AWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLDDLKVTVANVES 146

Query: 179 DGTGLSCSLADKI 217
            G   + S AD I
Sbjct: 147 GGE-FTVSSADDI 158


>At1g60740.1 68414.m06838 peroxiredoxin type 2, putative strong
           similarity to type 2 peroxiredoxin [Brassica rapa subsp.
           pekinensis] GI:4928472; contains Pfam profile: PF00578
           AhpC/TSA (alkyl hydroperoxide reductase and
           thiol-specific antioxidant) family
          Length = 162

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2   AWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEP 178
           AWG  +     V+ +AD SG +   L L  +L   G G RS+RF++++ + KV   NVE 
Sbjct: 87  AWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVEN 146

Query: 179 DGTGLSCSLADKIK 220
            G     S  D +K
Sbjct: 147 GGEFTVSSAEDILK 160


>At1g65970.1 68414.m07485 peroxiredoxin type 2, putative strong
           similarity to type 2 peroxiredoxin [Brassica rapa subsp.
           pekinensis] GI:4928472; contains Pfam profile: PF00578
           AhpC/TSA (alkyl hydroperoxide reductase and
           thiol-specific antioxidant) family
          Length = 162

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2   AWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRFSMVIVDSKVQDLNVEP 178
           AWG  +     V+ +AD SG +   L L  +L   G G RS+RF++++ + KV   NVE 
Sbjct: 87  AWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVES 146

Query: 179 DGTGLSCSLADKIK 220
            G     S  D +K
Sbjct: 147 GGEFTVSSAEDILK 160


>At1g18740.1 68414.m02337 expressed protein
          Length = 382

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 219 LILSAREQDRPVPSGSTFRSWTLLSTMTIENLLERKPPSGGRLVPRSRA 73
           +++SA +  RP+  G   R+   L  + I  L E+  PSG  L  R+R+
Sbjct: 138 IVISALDSHRPIGEGQLRRAKKALIDLAIGMLDEKDHPSGTNLAHRNRS 186


>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 420

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 31  KGAYASRSQRQLHQGSGPGHQSAAARRFPLQKVLDGHR*QQGPRSECGAR 180
           KG    + +RQ HQG G GH +A++   P    ++  +   GPR   G R
Sbjct: 350 KGRVVGQGRRQNHQG-GNGHGTASSSSHPNYHPVEVSKRPPGPRMPDGTR 398


>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 422

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 31  KGAYASRSQRQLHQG-SGPGHQSAAARRFPLQKVLDGHR*QQGPRSECGAR 180
           KG    + +RQ HQG +G GH +A++   P    ++  +   GPR   G R
Sbjct: 350 KGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMPDGTR 400


>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
           [Arabidopsis thaliana] GI:4894914; contains Pfam profile
           PF02416: mttA/Hcf106 family
          Length = 260

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 54  PAATSSRLWTWAPICRRSEVSAPKGSRWSSLTARSK 161
           P  T S L+++ P+  R + S P  S W SL   S+
Sbjct: 15  PTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSR 50


>At3g55060.1 68416.m06115 expressed protein contains weak similarity
           to intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae];
           expression supported by MPSS
          Length = 896

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 515 LIGCLIRKIAQLTTEADK*HENEN 444
           +I  L R++A+LTT ADK HE  N
Sbjct: 460 MITHLERRVAELTTTADKLHEENN 483


>At1g34130.1 68414.m04234 oligosaccharyl transferase STT3 subunit,
           putative similar to SP|P39007 Oligosaccharyl transferase
           STT3 subunit {Saccharomyces cerevisiae}; contains Pfam
           profile PF02516: Oligosaccharyl transferase STT3 subunit
          Length = 735

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 762 MGSS*LVSSHEIFFFFDLAHYMNNERHYFENFLILTKT*QEILINATA 619
           MG+  +    ++F+F D   Y  N+   F+ FL +T T   IL+   A
Sbjct: 291 MGAMGVFLLMQVFYFLDWVKYQLNDTKLFQTFLRITVT-SAILVGGVA 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,139,400
Number of Sequences: 28952
Number of extensions: 296457
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)