Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120092.Seq
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   113   3e-26
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   110   2e-25
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    42   7e-05
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    34   0.018
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    27   3.7  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   6.4  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.4  
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    26   6.4  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   8.5  
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    25   8.5  

>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  113 bits (271), Expect = 3e-26
 Identities = 44/68 (64%), Positives = 55/68 (80%)
 Frame = -1

Query: 205 KPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQELYHFMGC 26
           +PGDHV+ LY P+C  CKFC + KTNLC K+R TQG+G+MPDGT RF C+ + L H+MGC
Sbjct: 86  RPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLHYMGC 145

Query: 25  STFSQYTV 2
           S+FSQYTV
Sbjct: 146 SSFSQYTV 153



 Score =  103 bits (248), Expect = 2e-23
 Identities = 49/72 (68%), Positives = 56/72 (77%)
 Frame = -2

Query: 459 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 280
           MS  GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+  + VCHTDAYTLSG DPE
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60

Query: 279 GVFPVVLGLKAA 244
           G FP+VLG + A
Sbjct: 61  GAFPIVLGHEGA 72


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  110 bits (264), Expect = 2e-25
 Identities = 44/66 (66%), Positives = 53/66 (80%)
 Frame = -1

Query: 199 GDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQELYHFMGCST 20
           GD V+ LY P+C TCKFC + KTNLC ++R+TQG+G+MPDGT RF C G  L HFMGCST
Sbjct: 91  GDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLHFMGCST 150

Query: 19  FSQYTV 2
           FS+YTV
Sbjct: 151 FSEYTV 156



 Score =  107 bits (256), Expect = 2e-24
 Identities = 46/70 (65%), Positives = 56/70 (80%)
 Frame = -2

Query: 453 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 274
           T GK+I C AAVAW+   PLSIE ++V PP+  EVR+KI  +GVCHTDAYTLSGKDPEG+
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65

Query: 273 FPVVLGLKAA 244
           FPV+LG + A
Sbjct: 66  FPVILGHEGA 75


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -2

Query: 435 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 265
           K LAAV    G P ++  EE+ V  P   EV V I  TGVCHTD + L G  P     P+
Sbjct: 6   KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65

Query: 264 VLGLKAA 244
           + G + A
Sbjct: 66  IGGHEGA 72


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 396 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLG 256
           + I+ + +  PK GE+ VKI A  +  +D    +G  P  V+P ++G
Sbjct: 23  IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIVG 69


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 199  GDHVVPLY-VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQEL 44
            G HVV L  V   N C   +  KT    KV   +   + P G+R++ C G  L
Sbjct: 1036 GKHVVRLLQVRDANGCAASIT-KTQPAAKVSVVEMASLAPLGSRQYYCVGDRL 1087


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 645 WSSVGSCDDLLMNLVGNQP-SGFPLPSAS 728
           WS++G C  ++  LV   P +GF  P AS
Sbjct: 298 WSTIGFCSGVVAGLVAATPCAGFVSPHAS 326


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 205 KPGDHVVPLYVPQCNTCKFCLNPKTNLC 122
           KPGD V       C  C +C + + NLC
Sbjct: 84  KPGDPVAVEPGCVCRLCDYCRSGRYNLC 111


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 712 GKPLG*FPTRFMSRSSQDPTDDHDHSVKS 626
           G P+      F+S +S+ PTDD  H+V S
Sbjct: 210 GSPVRSSKNPFLSSNSRLPTDDSSHTVGS 238


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 404 PASHATAAKHLITLPTVDMTALDNCQSQNVEIIVEYEALTR 526
           P  HAT   H+I + T+D   LDN       +I  ++AL R
Sbjct: 26  PNEHAT---HVIAVDTLDRKVLDNGVLYTERLITCHQALPR 63


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 435 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 325
           K ++ +AWE  KPL + E+I  D   +GE+ V  T +G
Sbjct: 63  KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 594 LDRKPFLMPTKFVLSDSDILLHHRVSASYSTIISTFCDWQL--SSAVMSTV 448
           +D+K +L+P+   +     ++  R+  S    I  F D  L  ++A+MST+
Sbjct: 44  IDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTI 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,431
Number of Sequences: 5004
Number of extensions: 61827
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)