Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120092.Seq
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.98 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 639 WSWSSVGSCDDL 674
           W W +VG+CD L
Sbjct: 234 WEWHTVGNCDGL 245


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 362  KPVKCALRSRPPESAILTRIHSPEKIL 282
            + + C LR+  P   +L  +H+  ++L
Sbjct: 1102 RDLPCVLRASTPAPVVLEAVHASRRVL 1128


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 586 SIK*INLYICLFVHS*QSGRGHQLDPATTCS*ISWEISPVVS 711
           S++ I +Y   +     + RG   DP  T   ISW I+ VV+
Sbjct: 182 SVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVT 223


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 586 SIK*INLYICLFVHS*QSGRGHQLDPATTCS*ISWEISPVVS 711
           S++ I +Y   +     + RG   DP  T   ISW I+ VV+
Sbjct: 182 SVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVT 223


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 338 ILTRTSPAFGGSTS 379
           +L R SPAF G++S
Sbjct: 920 LLERASPAFSGTSS 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,462
Number of Sequences: 438
Number of extensions: 4529
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)