Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120090.Seq
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0024 + 178539-179418,179593-179938,180127-180244 31 1.1
06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575... 31 1.1
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014... 31 1.4
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 30 1.9
06_03_1285 - 28993305-28993442,28993559-28993798,28993881-289939... 29 3.3
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927... 29 4.4
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 29 4.4
01_07_0137 - 41381294-41382433 29 4.4
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 5.8
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 28 7.6
07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997... 28 7.6
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 28 7.6
>12_01_0024 + 178539-179418,179593-179938,180127-180244
Length = 447
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -2
Query: 785 IRDCKIGQHLYTHLGLPSFTSTALMVMLSP-NDSCSAILLA---YAQYGDKVTCAYSIHS 618
I CKIG +T+LGLP T+ +V +P D L A + G ++T S+ S
Sbjct: 130 ILGCKIGSLPFTYLGLPLGTTRPRVVDFAPLVDRVERRLTASSIFLPQGGRLTLINSVLS 189
Query: 617 SSDQFFISASQ 585
S +++S+ Q
Sbjct: 190 SIPTYYMSSLQ 200
>06_01_0770 -
5756200-5756741,5756790-5757286,5757356-5757782,
5757854-5757911
Length = 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 392 DTPPFYFINTRDNFRDNIAEHVFDMLLERHG 484
D P F+NT D+F I +H+ + + E+HG
Sbjct: 318 DQCPASFLNTSDDFTARIVDHMVEHIKEQHG 348
>04_03_0632 +
18200844-18200970,18201134-18201190,18201370-18201460,
18201545-18201705,18202176-18202303,18202386-18202523,
18202966-18203058,18203546-18203704
Length = 317
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V P++Y FTIL +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +1
Query: 574 VCEYCEAEIKNWSEDECIEY-AHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGRPKC 750
V E E +K W E E A LS C I E FGD + AV+ +G C
Sbjct: 617 VKESVEVAVKAWGEKSLTELEAEERLSYSCEKGRSILIVE-FGDILPKVAVIANKGLTNC 675
Query: 751 VYRCCPILQSRMDTFV 798
+ C + +D +
Sbjct: 676 IIGCLSTQEQWLDACI 691
>06_03_1285 -
28993305-28993442,28993559-28993798,28993881-28993961,
28994370-28994429,28994523-28994628,28994861-28994921,
28995198-28995246,28995475-28995599,28995809-28995947,
28996432-28996503,28996615-28996742,28997037-28997136,
28997757-28997897,28998116-28998232,28998505-28998609,
28999037-28999153
Length = 592
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 463 HVTRKTWLV*KLSHCNTAFINSLIVNGFKYNQVD 564
H+ K W + + H +T+ + + GFK+N+V+
Sbjct: 553 HIENKGWTIQHVDHKDTSEKEEIRIRGFKFNKVE 586
>05_04_0402 -
20991628-20991755,20992461-20992578,20992670-20992762,
20992841-20992978,20993070-20993197,20993270-20993430,
20993548-20993638,20993731-20993787,20993986-20994139
Length = 355
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAV 523
FNT V PI+Y FT L ++ I+FK + Q++
Sbjct: 248 FNTAVVSPIYYAMFTSL--TILASAIMFKDWSGQSI 281
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -2
Query: 746 LGLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSS 615
LG + T ++ + PN+ ++ ++A++Q G + TC S + +
Sbjct: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGA 206
>01_07_0137 - 41381294-41382433
Length = 379
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -2
Query: 314 WPSLVFVSALMTCTVDKLCSK--LQTRTRKCLICSWLADLS*N*TFATR**SPRPQTC 147
W +L F + VD + K T +R+ + +W D S + ATR PRP+ C
Sbjct: 182 WTALWFPKWMQHKYVDVVYHKGAFYTASREAAVTAWAPDASSSGLHATRVTEPRPEKC 239
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 252 TTNSYSKMFDM*LVSRFILKLNFCNSLIEPTSTDLSIN 139
T SY K+ + + S F+L + L++P T+LSIN
Sbjct: 1092 TLQSYCKLLEYCVNSSFLLSPSHNQLLVQPMVTELSIN 1129
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V PI+Y FT L ++ +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259
>07_03_1226 -
24998276-24998375,24998728-24998849,24998936-24999702,
25000447-25000618
Length = 386
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 616 DECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVKEGRPKCVYRCC 765
DE E ++ A +A H+ D + + AV K G C YRCC
Sbjct: 282 DEAAEAGGAEVADMAGAAAVLAPHQ---DVLRVGAVSHKGGLKMCKYRCC 328
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVDK 517
FN V PI+Y FT L ++ I+FK + Q+ K
Sbjct: 255 FNAAVVSPIYYAMFTTL--TILASAIMFKDWSGQSASK 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,106,647
Number of Sequences: 37544
Number of extensions: 364804
Number of successful extensions: 959
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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