Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120090.Seq
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   33   0.36 
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   1.5  
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)              29   3.4  
SB_29541| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   4.4  
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   29   4.4  
SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)              29   5.9  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   7.7  

>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 541 GFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 660
           GF Y    D V C  C   ++NW  D+     H   SP+C
Sbjct: 156 GFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWSPHC 195


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 502 HCNTAFINSLIVNGFKYNQVDDHVV-CEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKI 678
           HCN  F  S +++  K    D+ +V C YC+     +   E IE  H      CA  N++
Sbjct: 503 HCNGRFPASDLLSHVKMFHRDEKLVKCNYCKKIFTKYGMKEHIEQVHNKPGFKCAQCNQM 562


>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
          Length = 533

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = +1

Query: 553 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVK 732
           N+ D  + CE C++++     D+C E+    +  +C  +++     +    I +    VK
Sbjct: 15  NKADISITCETCQSDVATGRCDDCCEF----MCEFCITSHRRLLRTNQHKIIGLKEATVK 70

Query: 733 EGRPKCVYRCCP 768
            G+  C    CP
Sbjct: 71  -GKSSCKSHYCP 81


>SB_29541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/72 (22%), Positives = 32/72 (44%)
 Frame = +1

Query: 553 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVK 732
           N+ D  + CE C++++     D+C E+    +  +C  +++     +    I +    VK
Sbjct: 28  NKADISITCETCQSDVATGRCDDCCEF----MCEFCITSHRRLLRTNQHKIIGMKEATVK 83

Query: 733 EGRPKCVYRCCP 768
            G+  C    CP
Sbjct: 84  -GKSSCKSHYCP 94


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 633 IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
           IFNT +  PI+Y  FT+L   +I   I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512


>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 508 NTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 660
           ++A +  L   GF +   DD V C  C+  +K W  D+    +H    P C
Sbjct: 149 SSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199


>SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 711 GNVVAKRFVLSNLVGIRAIRRQGYVCIF-NTLVFGPIFYFCFTI 583
           G++V  ++V+   + +RA+R QG++ I  +TL   P +Y  + I
Sbjct: 65  GHLVIGQYVIKGTLLLRAVRYQGHLVITGSTLSIAPCYYGQYVI 108


>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
          Length = 462

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +1

Query: 553 NQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVK 732
           N+ D  + CE C++++     D+C E+    +  +C  A+           I +    VK
Sbjct: 91  NKADISITCETCQSDVATGRCDDCCEF----MCEFCITAHGRFLRTKQHKIIGVKEATVK 146

Query: 733 EGRPKCVYRCCP 768
            G+  C    CP
Sbjct: 147 -GKSNCKSHYCP 157


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 295 TKTKLGHINVSLNQNDPNVLILTVTL 372
           TKT L  +     +NDPNVL +TV L
Sbjct: 760 TKTALSTVQCCSLENDPNVLAITVIL 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,409,264
Number of Sequences: 59808
Number of extensions: 464120
Number of successful extensions: 1328
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)