Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120088.Seq
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    32   0.072
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    31   0.17 
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    29   0.67 
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    28   1.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   8.3  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   8.3  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 233 ESCLLLQRTCRQDRNLAQSDVNICSRDPLLAND-SPLLTNMC 111
           E   L  +TC   R+L Q   NI   DPL+ ND  P L  +C
Sbjct: 258 EERFLFTKTCNVFRSLIQIQKNIMKEDPLIRNDYEPQLLPIC 299


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 476 SQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVYRRHISTRY 300
           S T   +D R+ A   S+  +  P      +  E +RS H  G  R    YR H+S  +
Sbjct: 108 SSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHH 166


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -2

Query: 657 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFITT 499
           SN+R V T+D N +    D+ N++     +S  Q+ ++R ++  ++  D + T
Sbjct: 200 SNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQL-AVRSIKSSNSAHDLLAT 251


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -2

Query: 576 QGISDPQINSLRQLRRMDNVPDFITTPNRRDP-MQSDKTSQRPTCARPKVFKTHCSKTPV 400
           +G+   +  S+ Q   +  + D +++P RR+P + S KT  R + ++ KV  ++ +K   
Sbjct: 216 RGLDTIKHKSIEQNEILHVISDTLSSPRRRNPLLSSPKTPLRRSFSKSKVRNSNSTKRRN 275

Query: 399 YI 394
           +I
Sbjct: 276 FI 277


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
 Frame = -3

Query: 278 RRKLLCARRNAGENVESCLLLQRTC-----RQDRNLAQSDVNICSRDPLLANDSPLLTNM 114
           ++K+ C   N G+   SC  L   C      Q++ L++  +   S   L      + + M
Sbjct: 44  QKKIKC---NGGQPCISCKTLNIECVYAQKSQNKTLSREYLEELSERQLCLEY--IFSRM 98

Query: 113 CQGFNYETEKTVCRGSNPAANPNSP 39
           C  FN ET+  +      + N N P
Sbjct: 99  CPNFNLETKNLISISKKLSENENLP 123


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -3

Query: 218 LQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNP 60
           LQR   Q  N A  D+N+  +  L A    + T      N +T + +    +P
Sbjct: 79  LQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVILGRPSP 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,466
Number of Sequences: 5004
Number of extensions: 66302
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)