Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120088.Seq
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)                  32   0.41 
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)           31   1.2  
SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)                   31   1.2  
SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)              31   1.2  
SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)                30   2.2  
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)                   30   2.2  
SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)                    30   2.2  
SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)                  29   5.0  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_56342| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   6.7  
SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)               28   8.8  
SB_30272| Best HMM Match : GDI (HMM E-Value=0)                         28   8.8  
SB_17145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   8.8  

>SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)
          Length = 632

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -3

Query: 563 TLK*THCANCGAWTTCQTSLPHQTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHE 384
           +++ T C     W  C+        A  CS+     DQR H  RC+K+   + P+T S E
Sbjct: 12  SIRCTFCNTPIPWIICRKYTCSHCHAQYCSKEHKRADQRYHRHRCNKQ-PQEVPYTDSPE 70

Query: 383 NLESSRSG 360
           +  +S  G
Sbjct: 71  SSMASLLG 78


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267


>SB_6767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 267


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -1

Query: 652 QPVCEHFRHKQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQRARLHYHTKQTRS 482
           QP  EH +    HS Q  P+H+Q    H +PS +   P   H Q +  H    Q  S
Sbjct: 771 QPSPEHSQPSPEHS-QPSPEHSQPSPEHSQPSPEHCQPSPEHSQPSPEHSLPSQEHS 826



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -1

Query: 652 QPVCEHFRHKQNHS*QRCPQHTQCISGHFRPSNKLIAPIAAHGQRARLHYHTKQTRS 482
           QP  EH +    HS Q  P+H+Q    H +PS +   P   H   ++ H     T S
Sbjct: 778 QPSPEHSQPSPEHS-QPSPEHSQPSPEHCQPSPEHSQPSPEHSLPSQEHSLPSPTSS 833


>SB_39630| Best HMM Match : Pro_Al_protease (HMM E-Value=1.8)
          Length = 245

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 189


>SB_14319| Best HMM Match : Pedibin (HMM E-Value=2.5)
          Length = 226

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 146


>SB_10064| Best HMM Match : Strep_SA_rep (HMM E-Value=8.4)
          Length = 216

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 104 SDTPNVRNALGPKNTSEPHTLSLSHLPRSDNVP 136


>SB_4148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 723 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQI 553
           N  N  +  N  NN      + +NNR  S+++ NR  RNND  NI N+ +  S+ ++
Sbjct: 85  NNSNNNNRNNNSNNNSNNNNRSNNNRNNSSNNNNRSNRNNDSNNI-NISRNNSNSRV 140


>SB_54511| Best HMM Match : Strep_SA_rep (HMM E-Value=8)
          Length = 267

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 114 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 146


>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
          Length = 607

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 547 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 579


>SB_9323| Best HMM Match : MutS_IV (HMM E-Value=3.2)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 157 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 189


>SB_2482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 606 NDVPNIRNVF--QGISDPQINSLRQLRRMDNVP 514
           +D PN+RN    +  S+P   SL  L R DNVP
Sbjct: 235 SDTPNVRNALGPKNTSEPHTLSLFHLPRSDNVP 267


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -3

Query: 476 SQTKLPRDQR-AHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVYRRHISTRY 300
           S+++ PR +R + + R  +R+ +  P   SH +   SRS      R  S  +RRH S  +
Sbjct: 226 SRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRSH 285

Query: 299 NQRHQ*NRRK 270
           +   + +++K
Sbjct: 286 SPEKKKHKKK 295


>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
          Length = 470

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -2

Query: 639 STSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFITTPNRRDPMQSDKTS 460
           ST ++NR     D   I   ++  ++  +NS +     D+      T  +RD  QSD   
Sbjct: 319 STGEVNRNQPKADAAKINQQWKDATEQPMNSTQGKVAKDDEDHAKVTAGKRDRSQSDSEP 378

Query: 459 QRPTCARPK 433
           +  T  R K
Sbjct: 379 EDTTPLRQK 387


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 227  CLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPL 126
            C L Q  C++ +NL       C  +P LA+  PL
Sbjct: 1464 CTLTQTACQESKNLTVVSQGPCPPNPKLASGQPL 1497


>SB_56342| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 651

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 552 NSLRQLRRMDNVPDFITTPNRRDPMQSDKTSQR 454
           NSL     +D   DF+  P RR  +QS +T  R
Sbjct: 243 NSLACRDLIDEAKDFLLLPERRSKLQSSRTKPR 275


>SB_39231| Best HMM Match : zf-C2H2 (HMM E-Value=3.4e-31)
          Length = 505

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 660 LSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 517
           +SN    S  D  R + N  +PNI +V      P I+   +L R DN+
Sbjct: 143 MSNEGLTSMHDTQRESINISIPNIHSVEILPPSPVISEHNELPRADNL 190


>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -3

Query: 269 LLCARRNAGENVESCLLLQRTCRQDRNLAQSD 174
           LLC RR  G N E C    RTC  DRN    D
Sbjct: 778 LLCYRR-PGTNREMCYDELRTCISDRNCEVED 808


>SB_17145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 197 DRNLAQSDV-NICSRDPLLANDSPLLTNMCQGFNYETEKTVCRGSNPAANPNSP 39
           +R L+ +DV NIC++D ++ ND+       +  N E +  + +G+      ++P
Sbjct: 135 ERYLSPADVSNICAKDTVMLNDAIPSKEPIKTINPEAKPVILKGTTQEGVVSTP 188


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 227 CLLLQRTCRQDRNLAQSDVNICSRDPLLANDSPLLTNMCQGFNYETEK 84
           C LL+  C   R + +    +C  DP+ A+D     N C    Y  EK
Sbjct: 602 CHLLREACTSGRIIRRLYRGVC--DPVCASDGRTYQNECLAKKYACEK 647


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,342,081
Number of Sequences: 59808
Number of extensions: 560407
Number of successful extensions: 2007
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)