Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120088.Seq
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 29 3.4
Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 29 4.4
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 4.4
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 4.4
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 4.4
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 4.4
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 4.4
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 29 4.4
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 28 5.9
U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family ... 28 5.9
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p... 28 5.9
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 28 5.9
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p... 28 5.9
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 529 HGQRARLHYHTKQTRSNAVRQNFPETNVRTPEGVQNALQQNPRLHNHMR 383
H Q+ ++H +Q V Q+FP +V+ Q QQN R H+ +
Sbjct: 1111 HEQQQNQNHHVRQAVQEEVFQSFPRHDVQRHIHGQTNYQQNQRQHSQQQ 1159
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 693 LGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 589
+ + +++P Q S+N+FVS SDI I + D +
Sbjct: 28 ISDEKFEPAEQCSSNQFVSISDIGTIYDSEDTQQL 62
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 516 PDFITTPNRRDPMQSDKTSQRPTCARPKVFKTHCSK 409
PD TT + PM+S+K S+ T + KT SK
Sbjct: 200 PDLTTTASTTIPMKSEKPSRNETFINKVIAKTSASK 235
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 513 LARCPCAAIGAMSLFEGLKCPEIHCVC 593
L + PC G + +FE + PE+H +C
Sbjct: 927 LTKNPCIVAGDVRIFEAVDIPELHHMC 953
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 513 LARCPCAAIGAMSLFEGLKCPEIHCVC 593
L + PC G + +FE + PE+H +C
Sbjct: 927 LTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z81495-5|CAB04059.1| 178|Caenorhabditis elegans Hypothetical
protein F08G2.5 protein.
Length = 178
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -3
Query: 497 QTDAIQCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESS 369
++ + S++ PR +RA +R SKR + KPP T S ++ + S
Sbjct: 59 RSSELPISESPAPRARRARKQR-SKRKSVKPPNTSSDDSSDDS 100
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 699 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 580
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 723 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRN 583
NV NAP+V+N N + Q N + + N R ND PN++N
Sbjct: 611 NVQNAPNVQNASNVQNSQNGQNDKNDPNAQNSQNGQNRQND-PNVQN 656
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 699 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 580
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 699 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 580
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -3
Query: 515 QTSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 339
Q SLPH A+ + T R++ + S P + ++ +GH GR
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845
Query: 338 LSFVYRRH 315
+SFVY H
Sbjct: 846 VSFVYSHH 853
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -3
Query: 515 QTSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 339
Q SLPH A+ + T R++ + S P + ++ +GH GR
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845
Query: 338 LSFVYRRH 315
+SFVY H
Sbjct: 846 VSFVYSHH 853
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -3
Query: 515 QTSLPHQTDAI-QCSQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRR 339
Q SLPH A+ + T R++ + S P + ++ +GH GR
Sbjct: 786 QLSLPHSQSAVFPHNNTLTSRNRSTSSYYYSDVPDLGVPSNREMQESQAFGTGHIFGRIE 845
Query: 338 LSFVYRRH 315
+SFVY H
Sbjct: 846 VSFVYSHH 853
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 28.7 bits (61), Expect = 4.4
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Frame = -2
Query: 327 LPPPH*YKI*STPSIEPAEVIMCKEKRRRKRRVL--------FVIAAHLSSRPQSSSVGC 172
LPP H + +TP+ +P+ + + R +++ F +A LS+ P+ ++
Sbjct: 234 LPPKHTITMETTPA-QPSRNSLLRRSLRSPAKIIHPSASTTSFTSSARLSTPPRPTTTAA 292
Query: 171 *HLLKRPLVG*RFAPTNQHVPRI*L*NRKNSLSRQQSGR*PKFASIRRYQRSSCGP 4
L P +P + P +R L+R S R P SI RY+ SSC P
Sbjct: 293 QSLSLAPQTP---SPLSLPSPSGGQMSRSRDLTRS-SLRAPAGISISRYRSSSCAP 344
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 513 LARCPCAAIGAMSLFEGLKCPEIHCVC 593
L + PC G + +FE + PE+H +C
Sbjct: 900 LTKNPCIVPGDVRIFEAVDIPELHHMC 926
>U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family
protein 2, isoform c protein.
Length = 975
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 533 GAWTTCQTSLPHQTDAIQCSQTKLPRDQRAHARR-CSKRT 417
G W+TC TS T Q + + P D AH RR C+ T
Sbjct: 820 GGWSTCSTSCGPGTLVRQRTCNREPCDGSAHERRSCNVAT 859
>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
protein 2, isoform a protein.
Length = 1020
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 533 GAWTTCQTSLPHQTDAIQCSQTKLPRDQRAHARR-CSKRT 417
G W+TC TS T Q + + P D AH RR C+ T
Sbjct: 820 GGWSTCSTSCGPGTLVRQRTCNREPCDGSAHERRSCNVAT 859
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 513 LARCPCAAIGAMSLFEGLKCPEIHCVC 593
L + PC G + +FE + PE+H +C
Sbjct: 900 LTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
protease protein.
Length = 1020
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 533 GAWTTCQTSLPHQTDAIQCSQTKLPRDQRAHARR-CSKRT 417
G W+TC TS T Q + + P D AH RR C+ T
Sbjct: 820 GGWSTCSTSCGPGTLVRQRTCNREPCDGSAHERRSCNVAT 859
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,628,197
Number of Sequences: 27780
Number of extensions: 410611
Number of successful extensions: 1051
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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