Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120088.Seq
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             34   0.11 
At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferas...    29   2.4  
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    29   4.1  
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to...    28   7.2  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    27   9.5  
At1g69640.1 68414.m08012 acid phosphatase, putative similar to G...    27   9.5  

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 21/65 (32%), Positives = 24/65 (36%)
 Frame = +3

Query: 513 LARCPCAAIGAMSLFEGLKCPEIHCVCWGHRCYE*FCLCLKCSQTGC*IIDSPADICCFQ 692
           ++ C C      S F   KCP+  C CW          CLKC  T C         CC  
Sbjct: 349 VSSCCCPTFKCSSCFGKPKCPK--CSCW---------KCLKCPDTEC-----CRSSCCCS 392

Query: 693 GCVHW 707
           GC  W
Sbjct: 393 GCFSW 397


>At4g00550.1 68417.m00076 UDP-galactose:MGDG galactosyltransferase 2
           / digalactosyldiacylglycerol synthase 2 (DGD2) identical
           to digalactosyldiacylglycerol synthase (DGD2)
           GI:18141112 [Arabidopsis thaliana]
          Length = 473

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 681 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 565
           R++  ++ +  RF+  SD+NR++R +   + R+VF   S
Sbjct: 375 RHELSWEAATQRFIKVSDLNRLSRADSNLSKRSVFASSS 413


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 555 INSLRQLRRMDNVPDFITTPNRRDPMQS 472
           I S+++++  D  PDF+TT N +DPM S
Sbjct: 188 IPSMKKIKLKD-FPDFVTTTNPQDPMIS 214


>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
           homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
           thaliana]
          Length = 723

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/81 (25%), Positives = 30/81 (37%)
 Frame = -2

Query: 687 NNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDF 508
           +  Y P     N      SD N  + N D  +    F   SD  I S ++ +  D + D 
Sbjct: 372 DEEYDPDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGK--DIMKDV 429

Query: 507 ITTPNRRDPMQSDKTSQRPTC 445
           +  P+  D    D     PTC
Sbjct: 430 MALPS-DDSEDDDYDPDAPTC 449


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 643 CEHFRHKQNHS*QR-CPQHTQCIS 575
           C+H RHK   S    CP+HT+C S
Sbjct: 242 CQHPRHKNVSSGPYLCPKHTKCYS 265


>At1g69640.1 68414.m08012 acid phosphatase, putative similar to
           GI:5360721 from [Lupinus albus]
          Length = 260

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 614 LVTTMSPTYAMYFRAFQTLK*THCANCGAW 525
           LV+ MSP  +++F +F T+K T   +CG W
Sbjct: 163 LVSGMSPRTSIFFFSFATIK-TVDDHCGLW 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,460,480
Number of Sequences: 28952
Number of extensions: 368096
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)