Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120084.Seq
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0164 - 1342790-1342870,1343031-1343117,1343201-1343319,134... 32 0.44
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444... 29 4.1
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125... 28 7.1
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 28 7.1
12_02_0672 - 21726416-21726664,21727654-21727744,21727914-217279... 28 9.4
12_01_0162 - 1220348-1220428,1220585-1220671,1220757-1220875,122... 28 9.4
11_01_0165 - 1349319-1349399,1349523-1349609,1349691-1349809,134... 28 9.4
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119... 28 9.4
04_04_0263 + 24030132-24030539,24031575-24031586,24032023-240322... 28 9.4
01_01_0155 - 1362710-1363267 28 9.4
>11_01_0164 -
1342790-1342870,1343031-1343117,1343201-1343319,
1343405-1343641,1343984-1344044,1344360-1344752,
1345866-1346165
Length = 425
Score = 32.3 bits (70), Expect = 0.44
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 322 YAILANILQSD-AGTRRGRDHVSVVQARKQNSMFRVQMQ---ILGVLAEHPRRGLAKWLG 489
++IL N +Q +G G SVV S + + + ILG + +G+ W+G
Sbjct: 318 FSILLNSVQPVLSGVAIGSGWQSVVAYVNVTSYYFIGIPLGAILGYVLGFQAKGI--WIG 375
Query: 490 HFFKTHVGMPLMLYVLLRTDYKNESDVINE 579
T V ++L++ LRTD+K + ++ E
Sbjct: 376 MLLGTLVQTLVLLFITLRTDWKKQVEITRE 405
>03_05_1062 -
30043596-30043811,30044083-30044178,30044387-30044448,
30044990-30045023,30045220-30046173
Length = 453
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -2
Query: 747 KILNTRS*SFLAQSDGCFF--AFFDKWHAHVAFCVQRIRFV---ANQVIEKLHKYLCNQI 583
K+L+ +F++++ G + D WH+ V C Q FV Q++EK K C I
Sbjct: 340 KLLDLVGYNFISRTVGSILINSLLDAWHSCVYICCQGKEFVHLAVKQILEKAVKRPCTHI 399
>12_01_0167 -
1250619-1250699,1250824-1250910,1250992-1251110,
1251200-1251478,1252246-1252660
Length = 326
Score = 28.3 bits (60), Expect = 7.1
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +1
Query: 322 YAILANILQSD-AGTRRGRDHVSVVQARKQNS--MFRVQMQ-ILGVLAEHPRRGLAKWLG 489
++IL N +Q +G G SVV S +F + + ILG + +G+ W+G
Sbjct: 219 FSILLNSIQPVLSGVAVGSGWQSVVAYVNVTSYYLFGIPIGVILGYVLGFQVKGI--WIG 276
Query: 490 HFFKTHVGMPLMLYVLLRTDYKNESDVINE 579
T V ++L++ LRTD++ + ++ +
Sbjct: 277 MLLGTLVQTIVLLFITLRTDWEKQVEIARQ 306
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 339 HITIRRRHPTWTRSCVSRASPQT 407
+I RRRH T+T SC R SP +
Sbjct: 21 YIPPRRRHGTFTSSCAFRLSPSS 43
>12_02_0672 -
21726416-21726664,21727654-21727744,21727914-21727981,
21728684-21728809,21728893-21729113,21729876-21729903
Length = 260
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 460 PRRGLAK--WLGHFFKTHVGM---PLMLYVLLRTDYKNESDVINENNLI 591
P RG+A+ WL H K + LML +T + + SD+I+ N+L+
Sbjct: 125 PIRGIAEQEWLSHPTKNFITAFFRNLMLVTTSKTIFMDSSDIISANSLL 173
>12_01_0162 -
1220348-1220428,1220585-1220671,1220757-1220875,
1221543-1221603,1221915-1222307,1223612-1223914
Length = 347
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 436 ILGVLAEHPRRGLAKWLGHFFKTHVGMPLMLYVLLRTDYKNESDVINE 579
ILG +G+ W+G T V ++L++ LRTD++ + ++ E
Sbjct: 282 ILGYALGFEVKGI--WIGMLVGTLVQTLVLLFITLRTDWEKQVEIARE 327
>11_01_0165 -
1349319-1349399,1349523-1349609,1349691-1349809,
1349899-1350137,1350240-1350296,1350593-1350679,
1350822-1350955,1350971-1351357
Length = 396
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 436 ILGVLAEHPRRGLAKWLGHFFKTHVGMPLMLYVLLRTDYKNESDVINE 579
ILG + +G+ W+G T V ++L++ LRTD++ + ++ +
Sbjct: 331 ILGYVLGFQVKGI--WIGMLLGTLVQTIVLLFITLRTDWEKQVEIARQ 376
>11_01_0144 +
1187532-1187813,1188913-1189454,1189621-1189707,
1190151-1190260,1190346-1190464,1190548-1190634,
1191554-1191853
Length = 508
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 322 YAILANILQSD-AGTRRGRDHVSVVQARKQNSMFRVQMQ---ILGVLAEHPRRGLAKWLG 489
++IL N +Q +G G SVV S + + + ILG + +G+ W+G
Sbjct: 328 FSILLNSVQPVLSGVAIGSGWQSVVAYVNVTSYYLIGIPLGAILGYVLGFQAKGI--WIG 385
Query: 490 HFFKTHVGMPLMLYVLLRTDYKNE 561
T V ++L++ LRT++K +
Sbjct: 386 MLLGTLVQTLVLLFITLRTNWKKQ 409
>04_04_0263 +
24030132-24030539,24031575-24031586,24032023-24032267,
24032380-24032900,24033387-24033877
Length = 558
Score = 27.9 bits (59), Expect = 9.4
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Frame = +1
Query: 412 SMFRVQMQILGVLAEHPRRG---LAKWLGHFFK----THVGMPLMLYVLLRTDYKNESDV 570
+MFR ++G+ + RG ++ W + H P +L +L ++ N D
Sbjct: 194 TMFRNTKNVVGMSLRNELRGSKNVSLWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDF 253
Query: 571 INENNL-IT----QIFVQFFYNLICDKAYSLYTKRDMCVPFVKECKKATIGLRQEG 723
+ N + +T +F Q +Y D + + D C V KK + L Q+G
Sbjct: 254 LVPNQIQLTFTGKLVFEQHWYGFSDDGNWGSQNQNDACGMVVDSIKKKGLFLLQQG 309
>01_01_0155 - 1362710-1363267
Length = 185
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 458 CSARTPSICICTRNIEFCLRAC 393
CS P IC C +E C AC
Sbjct: 126 CSRSLPPICRCADEVESCAAAC 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,841
Number of Sequences: 37544
Number of extensions: 446708
Number of successful extensions: 1316
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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