Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120083.Seq
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    26   0.28 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.87 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    25   0.87 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.6  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   3.5  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   6.1  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.1  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 236 FLNSGSLRLCWSKYTQ*PKNSVPAIPTAI 150
           +  SGSL  CWS++TQ  +  +  I   I
Sbjct: 224 YKTSGSLYTCWSEFTQKTQGQIYGIKVDI 252


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 129 NHKNNVRYSCRNC 167
           +H N  RYSCR+C
Sbjct: 280 SHSNVYRYSCRDC 292


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 129 NHKNNVRYSCRNC 167
           +H N  RYSCR+C
Sbjct: 38  SHSNVYRYSCRDC 50


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +1

Query: 496 CFLRTARSFRTP-PILDEGEEQRNAGRRC 579
           C L T  + R   P+LD+G   RN    C
Sbjct: 8   CVLVTLATARNKAPLLDDGTRTRNKAAEC 36


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 439 RLNNCLVYFSKL 474
           RL NC++YF+++
Sbjct: 143 RLKNCVIYFNRI 154


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 640 INYYGHHVLLSSLQIH 593
           I +YGHH +LS    H
Sbjct: 255 IAFYGHHFILSDPSKH 270


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 246 RAKLNAQQNASRSRTLGGP 302
           R +L  QQN S SRT   P
Sbjct: 183 RQQLQQQQNKSASRTTTSP 201


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 141 NVRYSCRNCGNTV 179
           NV Y C  C NTV
Sbjct: 282 NVLYICNQCYNTV 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,806
Number of Sequences: 336
Number of extensions: 3190
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)