Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120083.Seq
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    37   0.003
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   1.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.2  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   6.7  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   8.9  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 163 IAGTLFLGYCVYFDQQRRKDPLFKKKLRER 252
           +  T  +GY +YFD +RR DP F+K L+ R
Sbjct: 10  LLATAAVGYAIYFDYKRRNDPHFRKTLKRR 39


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 237 EVERAKLNAQQNASRSRTLGGPVPDM--NDHEAMQRFFLQQIQ 359
           +++ A++N+Q NA  +  LG P PD   N     Q+ F QQ Q
Sbjct: 414 KIQNARMNSQ-NAPNTNKLGNPQPDNTGNPQAFSQQAFAQQQQ 455


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 706  SASFNIIYE*VYLQKTDKNKTKINYYGHHVLLSSLQIHNFLFDIFFLHYVAPRLHRGS 533
            S  FN + E V   + D++   I Y     L    +   FLFD+ +LH + P L   S
Sbjct: 993  SCLFNQLIEVVTEDQVDESTKGILYEIMSTLFVFSRAFPFLFDLSYLHLLKPYLRSAS 1050


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 145 LGIAVGIAGTLFLGYCVYF-DQQRRKDP 225
           LG+ +G+  ++F GYC  F D++  K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 316 TIMKLCR--DFSCNRFNSAKSCW 378
           T+ K+C+  + SC RFN  K  W
Sbjct: 84  TVQKVCKKLNISCRRFNFEKEYW 106


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = -3

Query: 461 YTKQLFSLSTNSYSLPEMFDSSFKITCSQQLFAELNLLQEKSLHSFMIVHVWNRSSEGTR 282
           +T QL  L T   S+PE+ +   K + S +LF  +  L++ S+    I H  NRS+E  R
Sbjct: 67  FTLQLGDLITEHTSVPELNEILDKFSQSNELFT-MRFLEKASI----IAHK-NRSAELAR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,043
Number of Sequences: 5004
Number of extensions: 55058
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)