Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120083.Seq
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)                 72   6e-13
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)                 31   1.0  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.2  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.2  

>SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)
          Length = 151

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 32/97 (32%), Positives = 56/97 (57%)
 Frame = +3

Query: 243 ERAKLNAQQNASRSRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQA 422
           +R +  AQ+  + +  +   +PD+ D  A+Q+FFL+++Q              V+HL  A
Sbjct: 42  KRRRERAQRQEADAADMQSRIPDLTDTAAVQKFFLEEVQIGEDLLTKGEYESAVKHLTNA 101

Query: 423 VAVCGQTEQLLSVLQQTMPAPIFHLLLKNCQKFQNAS 533
           VAVCGQ +QLL V +QT+P  +F +L+ N  + ++ +
Sbjct: 102 VAVCGQPQQLLQVFKQTLPPAVFQMLIDNINQMKDVT 138



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +1

Query: 151 IAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRER 252
           +  G+ G++FL YC+YFD +RR DP +KKKL E+
Sbjct: 9   VVAGVCGSMFLAYCIYFDYKRRSDPDYKKKLIEK 42


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 21  TFSQMADIKFN*RFLRTCLYRYCA*RTIVHE*KNDGNHKNN 143
           T S ++DIK   R L++CL R C  R+++       +H+NN
Sbjct: 608 TISHVSDIKKGQRTLKSCLNRGCGFRSLLRRQSKRFSHRNN 648


>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
          Length = 1033

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +3

Query: 126 GNHKNNVRYSCRNCGNTVLGLLCIL*PAKAQGS--AVQKEVERAKLNAQQNASRSRTLGG 299
           G  K +   +CR    T+ G+LC L   +  G    V    ER K      +SRSRT  G
Sbjct: 752 GALKTSSEITCREHEATIGGILCKLAMTRMDGENVPVGPSEERPKSRVPSRSSRSRTTSG 811

Query: 300 PVPDMNDHE 326
                ND +
Sbjct: 812 HSRPDNDSD 820


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 484 GAGIVC*STLSNCSVCPQTATACPRC 407
           GA   C    SNC++C +++T C  C
Sbjct: 582 GAQTKCLKCDSNCAICEESSTKCTSC 607


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 189 VTQEQCSRNSDSYT*RCSCDFH 124
           V Q Q  R+ D+ T RC+CD H
Sbjct: 613 VVQRQTDRSVDNVTSRCACDTH 634


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,947,894
Number of Sequences: 59808
Number of extensions: 401811
Number of successful extensions: 969
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)